Commits · master · Bosch, Quirine ten / RiftValley_WithinHost · GitLab

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Nov 18, 2022
- Merge branch 'cecilia_h-master-patch-76215' into 'master' · b89022cb
  Cecilia, Helene authored 2 years ago
  b89022cb
- Modified README.md to update the citation of the (now published) paper · 5a4b8c24
  Cecilia, Helene authored 2 years ago
  
  5a4b8c24
Mar 30, 2022
- Small modifications to format figures for publications · 776e3b74
  Cecilia, Helene authored 3 years ago
  
  776e3b74
Mar 24, 2022
- Modifications made during the revision of the paper (round 1) · f96aa77b
  Cecilia, Helene authored 3 years ago
  
  f96aa77b
Mar 04, 2022
- Update gitignore · aebd8146
  Bosch, Quirine ten authored 3 years ago
  
  aebd8146
Feb 02, 2022
- Some scripts were missing (_Functions_MCMC.R and _Species_Fitting.R) to... · 0b640f48
  Cecilia, Helene authored 3 years ago
  0b640f48
Nov 12, 2021
- This repository contains code used in the following paper. · 23cb4938
  Cecilia, Helene authored 3 years ago
  23cb4938
- Test code cleaned for Plos CB submission · 6c35706e
  Cecilia, Helene authored 3 years ago
  
  6c35706e
Feb 23, 2021
- Within-host model fitted to needle vs mosquito infections, dead vs survive outcomes · 7b42354a
  Cecilia, Helene authored 4 years ago
  7b42354a
Dec 17, 2020
- Merge branch 'master' of https://git.wur.nl/bosch123/riftvalley_withinhost · b5f96412
  Cecilia, Helene authored 4 years ago
  
  b5f96412
- Model from Petrie et al. 2013 Reducing Uncertainty in Within-Host Parameter... · 1d53c976
  Cecilia, Helene authored 4 years ago
  1d53c976
Oct 13, 2020
- updating gitignore file (.Rhistory) · 88a4cabc
  quirine authored 4 years ago
  
  88a4cabc
Oct 09, 2020
- First try at optimizing sd for the mcmc sampling. Results saved in Output.... · b24c9ccf
  Cecilia, Helene authored 4 years ago
  b24c9ccf
- Update bibliography · 4102f8c6
  Cecilia, Helene authored 4 years ago
  
  4102f8c6
- A bit more details on what was done in other papers with dual-measures (RNA and TCID) · 08699253
  Cecilia, Helene authored 4 years ago
  
  08699253
- Model modification to differenciate between the observation process (RNA... · 0a8ef504
  Cecilia, Helene authored 4 years ago
  0a8ef504
- fix issue: do.call needs a list of parameters, each must have a name to be... · 4e043018
  Cecilia, Helene authored 4 years ago
  4e043018
- Fix file tree · d8c9f3f3
  Cecilia, Helene authored 4 years ago
  
  d8c9f3f3
- Removed wrapper adding confusion and lacking transparency · 68ef06ae
  Cecilia, Helene authored 4 years ago
  68ef06ae
- Fixing file tree · dbd60d7d
  Cecilia, Helene authored 4 years ago
  
  dbd60d7d
- Hackathon · 32a674bd
  Cecilia, Helene authored 4 years ago
  32a674bd
Oct 06, 2020
- MCMC algo written from scratch (Functions_MCMC) · 417b2771
  Cecilia, Helene authored 4 years ago
  417b2771
Sep 28, 2020
- Upload Example Home cooked MCMC · 2f22372b
  Bosch, Quirine ten authored 4 years ago
  
  2f22372b
Sep 24, 2020
- Code to test basic model (agreed on 21/09 meeting, see manuscript_draft... · 7e759647
  Cecilia, Helene authored 4 years ago
  7e759647
Sep 19, 2020
- Script Rift_WithinHost_Temperature.R exploring correlations between viral... · 1fc2d567
  Cecilia, Helene authored 4 years ago
  1fc2d567
- Document stating modelling hypothesis and research questions needing discussion · 2becb6bb
  Cecilia, Helene authored 4 years ago
  2becb6bb
Jul 21, 2020
- Temporary new directory "start_fresh" where I proceed to clean the code to... · a6d0074b
  Cecilia, Helene authored 4 years ago
  a6d0074b
Jun 24, 2020
- Segment analysis : corrected confidence interval function (sample_from_CI) +... · 579ac77d
  Cecilia, Helene authored 4 years ago
  579ac77d
Jun 19, 2020
- Segment analysis: likelihood ratio test to justify the use of species-specific... · 7a7abb3e
  Cecilia, Helene authored 4 years ago
  7a7abb3e
Jun 17, 2020
- Segment analysis : going further on analysing the results, comparing fits of... · 4769a3d7
  Cecilia, Helene authored 4 years ago
  4769a3d7
Jun 10, 2020
- Updated segments scripts to convert covariance to correlation, and compute... · 53816b9b
  Cecilia, Helene authored 4 years ago
  53816b9b
May 26, 2020
- Segment script modified to automatize the possibility to fix/estimate given... · 85814a72
  Cecilia, Helene authored 5 years ago
  85814a72
May 15, 2020
- Segment script modified to test 3 nested models: · ec6391af
  Cecilia, Helene authored 5 years ago
  ec6391af
May 04, 2020
- Segments script updated to include correlation between segments · f9f8f7c2
  Cecilia, Helene authored 5 years ago
  f9f8f7c2
Apr 21, 2020
- Added RITRA data and scripts to create fitR models with different likelihoods... · 7599d2bd
  Cecilia, Helene authored 5 years ago
  7599d2bd
Apr 20, 2020
- data path changed to match script. Comment added in code · 2fc43d9d
  Cecilia, Helene authored 5 years ago
  
  2fc43d9d
- Update Data/RVF_invitro_segmentcounts.csv · 19221ae4
  Bosch, Quirine ten authored 5 years ago
  
  19221ae4
- Upload script to analyse segment count data · b25881c3
  Bosch, Quirine ten authored 5 years ago
  b25881c3
- Delete Rift_Segments_Main.R · 8053b7ee
  Bosch, Quirine ten authored 5 years ago
  
  8053b7ee
- Upload script to analyse segment counts · 7b796843
  Bosch, Quirine ten authored 5 years ago
  
  7b796843