WithinHost_Rift

This repository contains code used in the following paper.

Bunch of names (year) Title. Journal or RXivs

All code contained within this repository is released under the CRAPL v0.1 License. Data provided in this repository are sufficient to rerun all analyses. This code base is part of an associated Open Science Framework project (link to OFS).

The scripts for simulations and model fitting were performed on the [University name(s)] cluster and on a desktop computer (Operating system). Processing of outputs was also done on a desktop computer (Mac OSX)

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Set up of code base:

• Code contains code to analyze the data, perform calculations, and generate output and figures
• Data contains experimental data described in manuscript. Read by scripts from the Code folder
• Output contains RData files with workspaces generated by scripts in the 'Code' folder.

Code folder

The scripts in this folder are used to analyze XXX.

• NAME.R, which DESCRIPTION

Data folder

• NAME.csv , contains data from XXX

Output folder

• NAME.RData, data generated by NAME.R

Any questions about this code base can be directed to quirine.tenbosch@wur.nl or helene.cecilia@oniris-nantes.fr