Explore projects

nemmap is a single-command pipeline to process bacterial (full 16S) or fungal (full ITS) reads obtained by Nanopore sequencing. This pipeline is developed and intended for internal use by the Laboratory of Nematology (WUR).

A collaborative space of the EJP Soil project for disseminating soil datasets

PanTools, WUR Bioinformatics

HPC Deployment toolbox used at WUR for Anunna

NEmatology DNA Variant Analysis and Calling pipeline = NEDVAC

Dynamic Ecosystem Model Oosterschelde

This repository is the RNA sequence counts/TPMs/FPKMs pipeline.

NEmatology RNA Variant Analysis and Calling pipeline = NERVAC

Het MNP model zelf.

A collection of Jupyter notebooks showing some test cases in R.