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MCMC algo written from scratch (Functions_MCMC)
Many wrapper to allow generic functions to be applied systematically for a given model/dataset/parameters without passing it as parameter Maybe it adds confusion to the code and is not necessary ? Negative numbers returned by odesolver are set equal to 0 If MCMC sampling gives Inf for a parameter, it is automatically not accepted (to avoid likelihood = NA) Regular message "DLSODA corrector convergence failed repeatedly" see if it's worrying and should be fixed TODO : format results to allow the use of BayesianTools diagnostics plots
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- Code/Rift_WithinHost_Functions_Build_BasicModel.R 3 additions, 5 deletionsCode/Rift_WithinHost_Functions_Build_BasicModel.R
- Code/Rift_WithinHost_Functions_Likelihood.R 36 additions, 49 deletionsCode/Rift_WithinHost_Functions_Likelihood.R
- Code/Rift_WithinHost_Functions_MCMC.R 96 additions, 71 deletionsCode/Rift_WithinHost_Functions_MCMC.R
- Code/Rift_WithinHost_Main_MCMC.R 79 additions, 0 deletionsCode/Rift_WithinHost_Main_MCMC.R
- Code/Rift_WithinHost_Main_SimulateData_BasicModel.R 1 addition, 4 deletionsCode/Rift_WithinHost_Main_SimulateData_BasicModel.R
- Code/Rift_WithinHost_Main_Testing_BasicModel.R 18 additions, 15 deletionsCode/Rift_WithinHost_Main_Testing_BasicModel.R
- Output/basic_model_sim_data_dead_sheep.csv 9 additions, 0 deletionsOutput/basic_model_sim_data_dead_sheep.csv
- Output/basic_model_sim_data_params.RData 0 additions, 0 deletionsOutput/basic_model_sim_data_params.RData
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