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Model from Petrie et al. 2013 Reducing Uncertainty in Within-Host Parameter...
Model from Petrie et al. 2013 Reducing Uncertainty in Within-Host Parameter Estimates of Influenza Infection by Measuring Both Infectious and Total Viral Load Package odin used to speed up the model (convert the ODE system in C) MCMC works when fixing delta, p and kl and estimating beta, xi, dinf and ch
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- Petrie_IT_WORKS/Code/.Rhistory 512 additions, 0 deletionsPetrie_IT_WORKS/Code/.Rhistory
- Petrie_IT_WORKS/Code/Rift_WithinHost_Functions_Build_BasicModel.R 154 additions, 0 deletions...T_WORKS/Code/Rift_WithinHost_Functions_Build_BasicModel.R
- Petrie_IT_WORKS/Code/Rift_WithinHost_Functions_Likelihood.R 105 additions, 0 deletionsPetrie_IT_WORKS/Code/Rift_WithinHost_Functions_Likelihood.R
- Petrie_IT_WORKS/Code/Rift_WithinHost_Functions_MCMC.R 272 additions, 0 deletionsPetrie_IT_WORKS/Code/Rift_WithinHost_Functions_MCMC.R
- Petrie_IT_WORKS/Code/Rift_WithinHost_Main_MCMC.R 239 additions, 0 deletionsPetrie_IT_WORKS/Code/Rift_WithinHost_Main_MCMC.R
- Petrie_IT_WORKS/Code/Rift_WithinHost_Main_RITRADataFormatting.R 110 additions, 0 deletions..._IT_WORKS/Code/Rift_WithinHost_Main_RITRADataFormatting.R
- Petrie_IT_WORKS/Code/Rift_WithinHost_Main_SimulateData_BasicModel.R 146 additions, 0 deletions...WORKS/Code/Rift_WithinHost_Main_SimulateData_BasicModel.R
- Petrie_IT_WORKS/Code/main_mcmc_petrie.R 265 additions, 0 deletionsPetrie_IT_WORKS/Code/main_mcmc_petrie.R
- Petrie_IT_WORKS/Code/test_mcmc_petrie_real_data.R 349 additions, 0 deletionsPetrie_IT_WORKS/Code/test_mcmc_petrie_real_data.R
- Petrie_IT_WORKS/Code/test_odin_package.R 88 additions, 0 deletionsPetrie_IT_WORKS/Code/test_odin_package.R
- Petrie_IT_WORKS/Data/RITRAdata/RIFT_Data_RITRA.RData 0 additions, 0 deletionsPetrie_IT_WORKS/Data/RITRAdata/RIFT_Data_RITRA.RData
- Petrie_IT_WORKS/Data/RITRAdata/RITRA_data_formatted.csv 289 additions, 0 deletionsPetrie_IT_WORKS/Data/RITRAdata/RITRA_data_formatted.csv
- Petrie_IT_WORKS/Data/RITRAdata/dead_sheep_data.csv 63 additions, 0 deletionsPetrie_IT_WORKS/Data/RITRAdata/dead_sheep_data.csv
- Petrie_IT_WORKS/Data/RITRAdata/surv_sheep_data.csv 145 additions, 0 deletionsPetrie_IT_WORKS/Data/RITRAdata/surv_sheep_data.csv
- Petrie_IT_WORKS/Output/global_params.RData 0 additions, 0 deletionsPetrie_IT_WORKS/Output/global_params.RData
- Petrie_IT_WORKS/Output/petrie_model_erlang20_odin_real_data_surv_sheep.rds 0 additions, 0 deletions...utput/petrie_model_erlang20_odin_real_data_surv_sheep.rds
- Petrie_IT_WORKS/Output/petrie_model_erlang20_odin_real_data_surv_sheep_opti1_beta_ch_dinf_xi.rds 0 additions, 0 deletions...ang20_odin_real_data_surv_sheep_opti1_beta_ch_dinf_xi.rds
- Petrie_IT_WORKS/Output/petrie_model_erlang20_odin_real_data_surv_sheep_opti2_beta_ch_dinf_xi.rds 0 additions, 0 deletions...ang20_odin_real_data_surv_sheep_opti2_beta_ch_dinf_xi.rds
- Petrie_IT_WORKS/Output/petrie_model_erlang20_odin_real_data_surv_sheep_opti3_beta_ch_dinf_xi.rds 0 additions, 0 deletions...ang20_odin_real_data_surv_sheep_opti3_beta_ch_dinf_xi.rds
- Petrie_IT_WORKS/Output/petrie_model_erlang20_odin_real_data_surv_sheep_opti_beta_delta_p_dinf.rds 0 additions, 0 deletions...ng20_odin_real_data_surv_sheep_opti_beta_delta_p_dinf.rds
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