Commits · master · Overduin, Sam / TaxaSPAdes

Mar 12, 2020
- Update reset_spades_for_taxa.sh · 8c8f8e71
  Overduin, Sam authored 5 years ago
  
  8c8f8e71
- Update reset_spades_for_taxa.sh · 23e87ed6
  Overduin, Sam authored 5 years ago
  
  23e87ed6
- Upload reset_spades_for_taxa.sh · 48c747ea
  Overduin, Sam authored 5 years ago
  
  48c747ea
- Update append_taxatree_to_reads.py · 98bb1497
  Overduin, Sam authored 5 years ago
  
  98bb1497
- Update cut_barcode_from_reads.py · 852edf5b
  Overduin, Sam authored 5 years ago
  
  852edf5b
Mar 05, 2020
- Upload cut_barcode_from_reads.py · f1323363
  Overduin, Sam authored 5 years ago
  
  f1323363
Feb 28, 2020
- Update README.md · f62a6ce7
  Overduin, Sam authored 5 years ago
  
  f62a6ce7
Feb 25, 2020
- Update README.md · d42eeabb
  Overduin, Sam authored 5 years ago
  
  d42eeabb
Feb 24, 2020
- Documentation in README.md · 860c5029
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  View commits for tag v1.0_beta v1.0_beta
  
  860c5029
- Merge remote-tracking branch 'origin/master' · 50bbcb3f
  Overduin, Sam authored 5 years ago
  
  50bbcb3f
- Upload scripts/append_taxatree_to_reads.py · 8bc9c290
  Overduin, Sam authored 5 years ago
  
  8bc9c290
- Add new directory · 35b717e8
  Overduin, Sam authored 5 years ago
  
  35b717e8
Feb 21, 2020
- Delete aa_todo_notes · 04a75dfc
  Overduin, Sam authored 5 years ago
  
  04a75dfc
- Impl. taxaSPAdes as option with --taxonomy as argument & some clean-up · ae290f75
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  ae290f75
Feb 06, 2020
- Impl. LCA for PathVertex::GetTaxaTree, TaxaBreak during scaffolding. · a3d9211c
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  a3d9211c
Jan 15, 2020
- Impl. PathVertex::GetTaxaTree, enabled LCA testing & moved TaxaBreak forwards · 74d6406f
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  74d6406f
Jan 08, 2020
- Impl. final contig taxa assignment (fuzzy_lca), parameter testing module & fixes · cb555c2d
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  cb555c2d
Dec 06, 2019
- Impl. extra BarcodeIndex serialisation, use conjugate edges & edges to fasta output · c8303759
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  c8303759
Dec 03, 2019
- Improved taxonomy assignment & implemented taxonomy transition filter. · 5b1631c0
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  5b1631c0
Nov 29, 2019
- barcode_index_builder.hpp: · ba6cfe86
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  ba6cfe86
Nov 27, 2019
- barcode_index_builder.hpp: · d471de51
  Overduin, Sam authored 5 years ago and Overduin, Sam committed 5 years ago
  d471de51
Nov 22, 2019
- Changed scope of static const MAGIC_LOOP_CONSTANT due to CLion build process... · fd6ec33d
  Overduin, Sam authored 5 years ago
  fd6ec33d
Nov 18, 2019
- Initial commit · 8c9c2508
  Overduin, Sam authored 5 years ago
  
  8c9c2508