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Impl. extra BarcodeIndex serialisation, use conjugate edges & edges to fasta output
barcode_index.hpp: - Implemented taxa_codes + taxonomy_ serialisation - Made taxa_codes::map's public barcode_info_extractor.hpp: - Added funcs: EdgeIsValid, GetConjugateEdge, GetSequence, GetEdgeLength barcode_index_construction.cpp: - Added write_contigs_to_fasta for testing purposes. - Re-implemented taxonomy assignment to use edge & conjugate. read_cloud_connection_conditions.cpp: - In TaxaBreakPred.: if taxonomy of edge not found, try taxonomy of conjugate edge. Else taxa 0. logger.hpp: - Created special DEBUG_SAM for personal logging. Will change at end.
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- src/common/barcode_index/barcode_index.hpp 32 additions, 5 deletionssrc/common/barcode_index/barcode_index.hpp
- src/common/barcode_index/barcode_info_extractor.hpp 20 additions, 2 deletionssrc/common/barcode_index/barcode_info_extractor.hpp
- src/common/modules/path_extend/read_cloud_path_extend/scaffold_graph_construction/read_cloud_connection_conditions.cpp 31 additions, 13 deletions...d_graph_construction/read_cloud_connection_conditions.cpp
- src/common/utils/logger/logger.hpp 1 addition, 0 deletionssrc/common/utils/logger/logger.hpp
- src/projects/spades/barcode_index_construction.cpp 69 additions, 18 deletionssrc/projects/spades/barcode_index_construction.cpp
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