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bioinformatics
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feature/fix-msa-with-threshold
cb221b72
·
Fixed merge conflicts
·
1 day ago
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update_dependencies_pantools
e997bfb4
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Merge branch 'develop' into update_dependencies_pantools
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2 days ago
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develop
protected
fb4a46f0
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Merge branch 'ensure_busco_exists_before_optimal_grouping' into 'develop'
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2 days ago
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update_precommit_commands
caf48507
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update changelog
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2 days ago
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add_wgs_roi
ed6ad25b
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Merge branch 'add_gfa_export' into add_wgs_roi
·
2 weeks ago
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add_gfa_export
498c897d
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Merge branch 'develop' into add_gfa_export
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2 weeks ago
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feature/update-msa-with-aa-presence-threshold
93b8f240
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Added change to call ProteinAlignment class instead of MSA-class
·
1 month ago
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update_retrieve_function
d97b7198
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add output directory and improve code of retrieve_region
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1 month ago
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pantools_v4
default
protected
4f365575
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Merge branch 'release_v4.3.3' into 'pantools_v4'
·
2 months ago
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add_loading_bars
9197f6a6
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add loading bars for simple/single loops
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2 months ago
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try_create_export_json_entire_pangenome
bdb4cb85
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add some logging for progress
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5 months ago
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add_gfa_build_pangenome
f2765635
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also update frequency property on nucleotide nodes
·
7 months ago
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fix_kmer_pangenome_structure
5f023962
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rephrase loop/thread to jobs where needed for pangenome_structure
·
10 months ago
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fix_integer_overflow_kmer_structure
6fec20b5
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also try fixing integer overflow kmer_classification
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10 months ago
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validate_feature_strands
192bfa73
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Feature nodes are no longer made if the strand value does not match [+-],...
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1 year ago
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test_mcl_files
453f713a
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removed mcl input and output file cleanup
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1 year ago
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separate_connect_pangenome
c4610798
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Separated num_genomes property missing exception from pangenome node missing exception.
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1 year ago
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fix_inconsistent_homology_grouping
cb472d21
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fix similarity calculation for different ordering of proteins by breaking ties...
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1 year ago
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remove_unused_phylogeny_functions
7c448244
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remove unused phylogeny functions
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1 year ago
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playing_around_with_cicd
efde0204
·
print micromamba environments
·
1 year ago
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