⚠️ You may have noticed that WUR GitLab is occasionally slow due to increased bot traffic. We’re working to reduce this traffic, restore performance, and continuously improve the service. We apologize for the inconvenience.

Tags

Tags give the ability to mark specific points in history as being important

v5.0.0

ade0f3dc · Merge branch 'release_v5.0.0' into 'develop' · Oct 21, 2026

Release: PanTools v5.0.0
```
Start of PanTools v5
```
v5.0.0_rc

bec25490 · Merge branch 'hotfix_release' into 'develop' · Oct 14, 2026
```
Testing release candidate
```
v4.3.5

1769c55e · Merge branch 'release_v4.3.5' into 'pantools_v4' · Jun 25, 2026

Release: PanTools v4.3.5
v4.3.4

2063317d · Merge branch 'release_v4.3.4' into 'pantools_v4' · Sep 18, 2025

Release: PanTools v4.3.4
v4.3.3

4f365575 · Merge branch 'release_v4.3.3' into 'pantools_v4' · Feb 21, 2025

Release: PanTools v4.3.3
v4.3.2

dd6fa6cd · Merge branch 'release_v4.3.2' into 'pantools_v4' · Dec 20, 2024

Release: PanTools v4.3.2
v4.3.1

f2cfcd3c · Merge branch 'release_v4.3.1' into 'pantools_v4' · Dec 08, 2023

Release: PanTools v4.3.1
v4.3.0

f3d6da47 · Merge branch 'hotfix_help_deactivate_grouping' into 'pantools_v4' · Nov 23, 2023

Release: PanTools v4.3.0
```
Added functionalities to work with haplotype-resolved (phased) genomes
```
v4.2.3

db033e56 · Merge branch 'release_v4.2.3' into 'pantools_v4' · Sep 22, 2023

Release: PanTools v4.2.3
v4.2.2

03a8bf66 · Merge branch 'release_v4.2.2' into 'pantools_v4' · Jun 23, 2023

Release: PanTools v4.2.2
v4.2.1

283759d5 · Merge branch 'release_v4.2.1' into 'pantools_v4' · Jun 05, 2023

Release: PanTools v4.2.1
v4.2.0

8ff08a42 · Merge branch 'fix_readthedocs_configuration' into 'pantools_v4' · May 08, 2023

Release: PanTools v4.2.0
v4.1.1

ff860799 · Merge branch 'release_v4.1.1' into 'pantools_v4' · Jan 30, 2023

Release: PanTools v4.1.1
v4.1.0

c775d4ad · Merge branch 'release_v4.1.0' into 'pantools_v4' · Dec 23, 2022

Release: PanTools v4.1.0
```
Pangenome construction has been optimized in v4.1.0
```
v4.0.0

db13fd1a · Removed copied reference to read the docs manual · Dec 21, 2022

Release: PanTools v4.0.0
```
v4.0.0
A new, improved, command-line interface for PanTools
```
v3.4.0

5f8671bc · Merge branch 'release' into 'pantools_v3' · Dec 01, 2022

Release: PanTools v3.4.0
```
v3.4.0
Used for Jonkheer et al. (2022): https://doi.org/10.1093/bioinformatics/btac506
```
v3.2.0

3dcdaf34 · Merge branch 'pantools_v3.2' into pantools_v3 · Nov 28, 2022
v3.1.0

e5f30dea · Merge branch 'pantools_v3.1' into pantools_v3 · Nov 28, 2022
v3.0.0

2193fb0b · Updated author info in Pantools.java · Mar 08, 2021
v2.0.0

2bd17f67 · Added LICENSE · Oct 12, 2019

1
2