Commits · 0a47d7573c202279625ec1df73baecf641713c7f · Lannoy, Carlos de / baseLess

Jun 16, 2022
- add readme · 0a47d757
  Carlos de Lannoy authored 2 years ago
  
  0a47d757
Jun 14, 2022
- bug fixes · 533b6e49
  Carlos de Lannoy authored 2 years ago
  
  533b6e49
Jun 12, 2022
- update · d9418176
  Lannoy, Carlos de authored 2 years ago
  
  d9418176
Jun 10, 2022
- adapt to kmer counting to include 8 and 9 mers · 1a46e299
  Lannoy, Carlos de authored 2 years ago
  
  1a46e299
Jun 06, 2022
- update · 6e4a677d
  Lannoy, Carlos de authored 2 years ago
  
  6e4a677d
- update · 15677020
  Lannoy, Carlos de authored 2 years ago
  
  15677020
Jun 04, 2022
- update · 08676e3d
  Carlos de Lannoy authored 2 years ago
  
  08676e3d
May 07, 2022
- start with tflite implementation · a80fd06e
  Lannoy, Carlos de authored 2 years ago
  
  a80fd06e
Apr 29, 2022
- batch outside tf · 4ce7e373
  Carlos de Lannoy authored 2 years ago
  
  4ce7e373
Apr 10, 2022
- remove coa detection directory · a0ad25a4
  Lannoy, Carlos de authored 2 years ago
  
  a0ad25a4
- add script for conversion h5 to trt · 055b870b
  Lannoy, Carlos de authored 2 years ago
  
  055b870b
- inference memory and batch size are arguments · b359af78
  Lannoy, Carlos de authored 2 years ago
  
  b359af78
Apr 04, 2022
- refactoring for jetson compatability · 8bdad70b
  Lannoy, Carlos de authored 2 years ago
  
  8bdad70b
Mar 28, 2022
- refactor path parsing functions · a8049062
  Lannoy, Carlos de authored 2 years ago
  
  a8049062
Feb 14, 2022
- bug fixes · 74fa6cb8
  Lannoy, Carlos de authored 3 years ago
  
  74fa6cb8
Feb 02, 2022
- misc · ba83bc11
  Carlos de Lannoy authored 3 years ago
  
  ba83bc11
Jan 30, 2022
- bug fixes abundance analysis · afad78e4
  Lannoy, Carlos de authored 3 years ago
  
  afad78e4
Jan 27, 2022
- abundance validation: allow multiple samples per species · 5911a83d
  Lannoy, Carlos de authored 3 years ago
  
  5911a83d
Jan 26, 2022
- kmer size as option · e06ba693
  Carlos de Lannoy authored 3 years ago
  
  e06ba693
Jan 21, 2022
- hacky solution to memory issues with long squiggles, small stuff · 7267e0f8
  Lannoy, Carlos de authored 3 years ago
  
  7267e0f8
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · a9a2f738
  Carlos de Lannoy authored 3 years ago
  
  a9a2f738
- fixes · c7f8551e
  Carlos de Lannoy authored 3 years ago
  
  c7f8551e
- Complete wrapper to generate in silico squiggles · 4a3dcb4e
  Noordijk, Ben authored 3 years ago
  
  4a3dcb4e
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 2bd98cc8
  Noordijk, Ben authored 3 years ago
  
  2bd98cc8
- In silico mixtures can now be made · c9b50ef2
  Noordijk, Ben authored 3 years ago
  
  c9b50ef2
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 39b2a868
  Carlos de Lannoy authored 3 years ago
  
  39b2a868
- coa training works · bf13b447
  Carlos de Lannoy authored 3 years ago
  
  bf13b447
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 9eda77b2
  Noordijk, Ben authored 3 years ago
  
  # Conflicts: # coa_detection/AbfData.py
  9eda77b2
- Started script to make in silico mixtures · b33e799f
  Noordijk, Ben authored 3 years ago
  
  b33e799f
- Added support for unfiltered examples · 259a7cc8
  Noordijk, Ben authored 3 years ago
  
  259a7cc8
- allow randomly drawing 1 example · 214a9635
  Carlos de Lannoy authored 3 years ago
  
  214a9635
- Merge branch 'coa_analysis' of git.wur.nl:lanno001/baseless into coa_analysis · f8bb3c9e
  Carlos de Lannoy authored 3 years ago
  
  Conflicts: coa_detection/AbfData.py
  f8bb3c9e
- db building works · b29decf4
  Carlos de Lannoy authored 3 years ago
  
  b29decf4
- Added ability to extract unfiltered data · 2bf73b7d
  Noordijk, Ben authored 3 years ago
  
  2bf73b7d
- Test test · 21539ecb
  Noordijk, Ben authored 3 years ago
  
  21539ecb
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · b032b870
  Noordijk, Ben authored 3 years ago
  
  # Conflicts: # coa_detection/AbfData.py
  b032b870
- Added get_pos and get_neg methods · 77b82102
  Noordijk, Ben authored 3 years ago
  
  77b82102
- ABF parsing, plotting, and filtering · b9d3f152
  Noordijk, Ben authored 3 years ago
  
  b9d3f152
- cOA detection general code structure · aa447c3e
  Carlos de Lannoy authored 3 years ago
  
  aa447c3e
Jan 20, 2022
- start abf reading functionality · 201ec87f
  Lannoy, Carlos de authored 3 years ago
  
  201ec87f