Replace population-mapping.yml

population-mapping.yml

-name: null
+name: /home/WUR/lensi010/miniconda3/envs/mapping-turkey
 channels:
   - defaults
-prefix: /home/WUR/lensi010/test_pipeline/single-cell-data-processing/enter/envs/population-mapping/envs/popmap2
+  - bioconda
+  - conda-forge
+dependencies:
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_gnu
+  - _r-mutex=1.0.1=anacondar_1
+  - aioeasywebdav=2.4.0=pyha770c72_0
+  - aiohttp=3.8.4=py310h2372a71_1
+  - aiosignal=1.3.1=pyhd8ed1ab_0
+  - alsa-lib=1.2.9=hd590300_0
+  - amply=0.1.5=pyhd8ed1ab_0
+  - appdirs=1.4.4=pyh9f0ad1d_0
+  - argcomplete=3.1.1=pyhd8ed1ab_0
+  - async-timeout=4.0.2=pyhd8ed1ab_0
+  - atk-1.0=2.38.0=hd4edc92_1
+  - attmap=0.13.2=pyhd8ed1ab_0
+  - attrs=23.1.0=pyh71513ae_1
+  - backports=1.0=pyhd8ed1ab_3
+  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
+  - bcrypt=3.2.2=py310h5764c6d_1
+  - binutils_impl_linux-64=2.40=hf600244_0
+  - bioconductor-biobase=2.58.0=r42ha9d7317_1
+  - bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
+  - bioconductor-biocio=1.8.0=r42hdfd78af_0
+  - bioconductor-biocparallel=1.32.5=r42hf17093f_1
+  - bioconductor-biostrings=2.66.0=r42ha9d7317_1
+  - bioconductor-data-packages=20230420=hdfd78af_0
+  - bioconductor-delayedarray=0.24.0=r42ha9d7317_1
+  - bioconductor-genomeinfodb=1.34.9=r42hdfd78af_0
+  - bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
+  - bioconductor-genomicalignments=1.34.0=r42ha9d7317_1
+  - bioconductor-genomicranges=1.50.0=r42ha9d7317_1
+  - bioconductor-iranges=2.32.0=r42ha9d7317_1
+  - bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
+  - bioconductor-noiseq=2.42.0=r42hdfd78af_0
+  - bioconductor-rhtslib=2.0.0=r42ha9d7317_1
+  - bioconductor-rsamtools=2.14.0=r42hf17093f_1
+  - bioconductor-rtracklayer=1.58.0=r42h58c1800_2
+  - bioconductor-s4vectors=0.36.0=r42ha9d7317_1
+  - bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
+  - bioconductor-xvector=0.38.0=r42ha9d7317_1
+  - bioconductor-zlibbioc=1.44.0=r42ha9d7317_2
+  - boto3=1.26.151=pyhd8ed1ab_0
+  - botocore=1.29.151=pyhd8ed1ab_0
+  - brotlipy=0.7.0=py310h5764c6d_1005
+  - bwa-mem2=2.2.1=hd03093a_5
+  - bwidget=1.9.14=ha770c72_1
+  - bzip2=1.0.8=h7f98852_4
+  - c-ares=1.19.1=hd590300_0
+  - ca-certificates=2023.05.30=h06a4308_0
+  - cachetools=5.3.0=pyhd8ed1ab_0
+  - cairo=1.16.0=hbbf8b49_1016
+  - certifi=2023.5.7=pyhd8ed1ab_0
+  - cffi=1.15.1=py310h255011f_3
+  - charset-normalizer=3.1.0=pyhd8ed1ab_0
+  - coin-or-cbc=2.10.10=h9002f0b_0
+  - coin-or-cgl=0.60.7=h516709c_0
+  - coin-or-clp=1.17.8=h1ee7a9c_0
+  - coin-or-osi=0.108.8=ha2443b9_0
+  - coin-or-utils=2.11.9=hee58242_0
+  - coincbc=2.10.10=0_metapackage
+  - colorama=0.4.6=pyhd8ed1ab_0
+  - configargparse=1.5.3=pyhd8ed1ab_0
+  - connection_pool=0.0.3=pyhd3deb0d_0
+  - cryptography=41.0.1=py310h75e40e8_0
+  - curl=8.1.2=h409715c_0
+  - datrie=0.8.2=py310h5764c6d_6
+  - defusedxml=0.7.1=pyhd8ed1ab_0
+  - docutils=0.20.1=py310hff52083_0
+  - dropbox=11.36.0=pyhd8ed1ab_0
+  - exceptiongroup=1.1.1=pyhd8ed1ab_0
+  - expat=2.5.0=hcb278e6_1
+  - fftw=3.3.10=nompi_hc118613_108
+  - filechunkio=1.8=py_2
+  - filelock=3.12.1=pyhd8ed1ab_0
+  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
+  - font-ttf-inconsolata=3.000=h77eed37_0
+  - font-ttf-source-code-pro=2.038=h77eed37_0
+  - font-ttf-ubuntu=0.83=hab24e00_0
+  - fontconfig=2.14.2=h14ed4e7_0
+  - fonts-conda-ecosystem=1=0
+  - fonts-conda-forge=1=0
+  - freetype=2.12.1=hca18f0e_1
+  - fribidi=1.0.10=h36c2ea0_0
+  - frozenlist=1.3.3=py310h5764c6d_0
+  - ftputil=5.0.4=pyhd8ed1ab_0
+  - gcc_impl_linux-64=13.1.0=hc4be1a9_0
+  - gdk-pixbuf=2.42.10=h6b639ba_2
+  - gettext=0.21.1=h27087fc_0
+  - gfortran_impl_linux-64=13.1.0=hd511a9b_0
+  - ghostscript=9.18=1
+  - giflib=5.2.1=h0b41bf4_3
+  - gitdb=4.0.10=pyhd8ed1ab_0
+  - gitpython=3.1.31=pyhd8ed1ab_0
+  - google-api-core=2.11.0=pyhd8ed1ab_0
+  - google-api-python-client=2.88.0=pyhd8ed1ab_0
+  - google-auth=2.19.1=pyh1a96a4e_0
+  - google-auth-httplib2=0.1.0=pyhd8ed1ab_1
+  - google-cloud-core=2.3.2=pyhd8ed1ab_0
+  - google-cloud-storage=2.9.0=pyh1a96a4e_0
+  - google-crc32c=1.1.2=py310he8fe98e_4
+  - google-resumable-media=2.5.0=pyhd8ed1ab_0
+  - googleapis-common-protos=1.57.1=pyhd8ed1ab_0
+  - graphite2=1.3.13=h58526e2_1001
+  - graphviz=8.0.5=h28d9a01_0
+  - grpcio=1.55.0=py310h1b8f574_1
+  - gsl=2.7=he838d99_0
+  - gtk2=2.24.33=h90689f9_2
+  - gts=0.7.6=h977cf35_4
+  - gxx_impl_linux-64=13.1.0=hc4be1a9_0
+  - harfbuzz=7.3.0=hdb3a94d_0
+  - htslib=1.17=h81da01d_2
+  - httplib2=0.22.0=pyhd8ed1ab_0
+  - icu=72.1=hcb278e6_0
+  - idna=3.4=pyhd8ed1ab_0
+  - imagemagick=7.1.1_11=pl5321hf48ede7_0
+  - importlib-metadata=6.6.0=pyha770c72_0
+  - importlib_resources=5.12.0=pyhd8ed1ab_0
+  - iniconfig=2.0.0=pyhd8ed1ab_0
+  - jbig=2.1=h7f98852_2003
+  - jinja2=3.1.2=pyhd8ed1ab_1
+  - jmespath=1.0.1=pyhd8ed1ab_0
+  - jq=1.5=0
+  - jsonschema=4.17.3=pyhd8ed1ab_0
+  - jupyter_core=5.3.0=py310hff52083_0
+  - kernel-headers_linux-64=2.6.32=he073ed8_15
+  - keyutils=1.6.1=h166bdaf_0
+  - krb5=1.20.1=h81ceb04_0
+  - lcms2=2.15=haa2dc70_1
+  - ld_impl_linux-64=2.40=h41732ed_0
+  - lerc=4.0.0=h27087fc_0
+  - libabseil=20230125.2=cxx17_h59595ed_2
+  - libblas=3.9.0=17_linux64_openblas
+  - libcblas=3.9.0=17_linux64_openblas
+  - libcrc32c=1.1.2=h9c3ff4c_0
+  - libcups=2.3.3=h36d4200_3
+  - libcurl=8.1.2=h409715c_0
+  - libdeflate=1.18=h0b41bf4_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libexpat=2.5.0=hcb278e6_1
+  - libffi=3.4.2=h7f98852_5
+  - libgcc=7.2.0=h69d50b8_2
+  - libgcc-devel_linux-64=13.1.0=he3cc6c4_0
+  - libgcc-ng=13.1.0=he5830b7_0
+  - libgd=2.3.3=hfa28ad5_6
+  - libgfortran-ng=13.1.0=h69a702a_0
+  - libgfortran5=13.1.0=h15d22d2_0
+  - libglib=2.76.3=hebfc3b9_0
+  - libgomp=13.1.0=he5830b7_0
+  - libgrpc=1.55.0=h59456c1_1
+  - libiconv=1.17=h166bdaf_0
+  - libjpeg-turbo=2.1.5.1=h0b41bf4_0
+  - liblapack=3.9.0=17_linux64_openblas
+  - liblapacke=3.9.0=17_linux64_openblas
+  - libnghttp2=1.52.0=h61bc06f_0
+  - libnsl=2.0.0=h7f98852_0
+  - libopenblas=0.3.23=pthreads_h80387f5_0
+  - libpng=1.6.39=h753d276_0
+  - libprotobuf=4.23.2=hd1fb520_4
+  - librsvg=2.56.1=h98fae49_0
+  - libsanitizer=13.1.0=hfd8a6a1_0
+  - libsodium=1.0.18=h36c2ea0_1
+  - libsqlite=3.42.0=h2797004_0
+  - libssh2=1.11.0=h0841786_0
+  - libstdcxx-devel_linux-64=13.1.0=he3cc6c4_0
+  - libstdcxx-ng=13.1.0=hfd8a6a1_0
+  - libtiff=4.5.0=ha587672_6
+  - libtool=2.4.7=h27087fc_0
+  - libuuid=2.38.1=h0b41bf4_0
+  - libwebp=1.3.0=hb47c5f0_0
+  - libwebp-base=1.3.0=h0b41bf4_0
+  - libxcb=1.15=h0b41bf4_0
+  - libxml2=2.11.4=h0d562d8_0
+  - libzlib=1.2.13=hd590300_5
+  - logmuse=0.2.6=pyh8c360ce_0
+  - make=4.3=hd18ef5c_1
+  - markdown-it-py=3.0.0=pyhd8ed1ab_0
+  - markupsafe=2.1.3=py310h2372a71_0
+  - mdurl=0.1.0=pyhd8ed1ab_0
+  - multidict=6.0.4=py310h1fa729e_0
+  - nbformat=5.9.0=pyhd8ed1ab_0
+  - ncurses=6.4=hcb278e6_0
+  - networkx=3.1=pyhd8ed1ab_0
+  - numpy=1.24.3=py310ha4c1d20_0
+  - oauth2client=4.1.3=py_0
+  - openjdk=20.0.0=h8e330f5_0
+  - openjpeg=2.5.0=hfec8fc6_2
+  - openssl=3.1.1=hd590300_1
+  - packaging=23.1=pyhd8ed1ab_0
+  - pandas=2.0.2=py310h7cbd5c2_0
+  - pango=1.50.14=heaa33ce_1
+  - parallel=20230522=ha770c72_0
+  - paramiko=3.2.0=pyhd8ed1ab_0
+  - pcre2=10.40=hc3806b6_0
+  - peppy=0.35.5=pyhd8ed1ab_0
+  - perl=5.32.1=2_h7f98852_perl5
+  - pip=23.1.2=pyhd8ed1ab_0
+  - pixman=0.40.0=h36c2ea0_0
+  - pkg-config=0.29.2=h36c2ea0_1008
+  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
+  - platformdirs=3.5.3=pyhd8ed1ab_0
+  - pluggy=1.0.0=pyhd8ed1ab_5
+  - ply=3.11=py_1
+  - prettytable=3.7.0=pyhd8ed1ab_0
+  - protobuf=4.23.2=py310hb875b13_1
+  - psutil=5.9.5=py310h1fa729e_0
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - pulp=2.7.0=py310hff52083_0
+  - pyasn1=0.4.8=py_0
+  - pyasn1-modules=0.2.7=py_0
+  - pycparser=2.21=pyhd8ed1ab_0
+  - pygments=2.15.1=pyhd8ed1ab_0
+  - pygraphviz=1.11=py310h91ff30a_0
+  - pynacl=1.5.0=py310h5764c6d_2
+  - pyopenssl=23.2.0=pyhd8ed1ab_1
+  - pyparsing=3.0.9=pyhd8ed1ab_0
+  - pyrsistent=0.19.3=py310h1fa729e_0
+  - pysftp=0.2.9=py_1
+  - pysocks=1.7.1=pyha2e5f31_6
+  - pytest=7.3.2=pyhd8ed1ab_0
+  - python=3.10.11=he550d4f_0_cpython
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python-fastjsonschema=2.17.1=pyhd8ed1ab_0
+  - python-irodsclient=1.1.8=pyhd8ed1ab_0
+  - python-tzdata=2023.3=pyhd8ed1ab_0
+  - python_abi=3.10=3_cp310
+  - pytz=2023.3=pyhd8ed1ab_0
+  - pyu2f=0.1.5=pyhd8ed1ab_0
+  - pyyaml=6.0=py310h5764c6d_5
+  - qualimap=2.2.2d=hdfd78af_2
+  - r-base=4.2.3=hfabd6f2_3
+  - r-bh=1.81.0_1=r42hc72bb7e_1
+  - r-bitops=1.0_7=r42h57805ef_2
+  - r-codetools=0.2_19=r42hc72bb7e_1
+  - r-cpp11=0.4.3=r42hc72bb7e_1
+  - r-crayon=1.5.2=r42hc72bb7e_2
+  - r-formatr=1.14=r42hc72bb7e_1
+  - r-futile.logger=1.4.3=r42hc72bb7e_1005
+  - r-futile.options=1.0.1=r42hc72bb7e_1004
+  - r-getopt=1.20.3=r42ha770c72_4
+  - r-lambda.r=1.2.4=r42hc72bb7e_3
+  - r-lattice=0.21_8=r42h57805ef_1
+  - r-matrix=1.5_4.1=r42h316c678_1
+  - r-matrixstats=1.0.0=r42h57805ef_1
+  - r-optparse=1.7.3=r42hc72bb7e_2
+  - r-rcurl=1.98_1.12=r42hf9611b0_2
+  - r-restfulr=0.0.15=r42h56115f1_2
+  - r-rjson=0.2.21=r42ha503ecb_3
+  - r-snow=0.4_4=r42hc72bb7e_2
+  - r-xml=3.99_0.14=r42hc38eee6_2
+  - r-yaml=2.3.7=r42h57805ef_1
+  - ratelimiter=1.2.0=pyhd8ed1ab_1003
+  - re2=2023.03.02=h8c504da_0
+  - readline=8.2=h8228510_1
+  - requests=2.31.0=pyhd8ed1ab_0
+  - rich=13.4.2=pyhd8ed1ab_0
+  - rsa=4.9=pyhd8ed1ab_0
+  - s3transfer=0.6.1=pyhd8ed1ab_0
+  - samblaster=0.1.26=h4ac6f70_4
+  - samtools=1.17=hd87286a_1
+  - sed=4.8=he412f7d_0
+  - setuptools=67.7.2=pyhd8ed1ab_0
+  - setuptools-scm=7.1.0=pyhd8ed1ab_0
+  - six=1.16.0=pyh6c4a22f_0
+  - slacker=0.14.0=py_0
+  - smart_open=6.3.0=pyhd8ed1ab_1
+  - smmap=3.0.5=pyh44b312d_0
+  - snakemake=6.5.3=hdfd78af_0
+  - snakemake-minimal=6.5.3=pyhdfd78af_0
+  - stone=3.3.1=pyhd8ed1ab_0
+  - stopit=1.1.2=py_0
+  - sysroot_linux-64=2.12=he073ed8_15
+  - tabulate=0.8.10=py310h06a4308_0
+  - tk=8.6.12=h27826a3_0
+  - tktable=2.10=hb7b940f_3
+  - toml=0.10.2=pyhd8ed1ab_0
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+  - tomlkit=0.11.8=pyha770c72_0
+  - toposort=1.10=pyhd8ed1ab_0
+  - traitlets=5.9.0=pyhd8ed1ab_0
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+  - xorg-libxi=1.7.10=h7f98852_0
+  - xorg-libxrender=0.9.10=h7f98852_1003
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+  - xz=5.2.6=h166bdaf_0
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+  - zipp=3.15.0=pyhd8ed1ab_0
+  - zlib=1.2.13=hd590300_5
+  - zstd=1.5.2=h3eb15da_6
+prefix: /home/WUR/lensi010/miniconda3/envs/mapping-turkey