diff --git a/population-mapping.yml b/population-mapping.yml index 9834ca3205ad2a53dc493ec2eafbc6863cee836a..de7222c66c0514889339c1c8f7794815a616f414 100644 --- a/population-mapping.yml +++ b/population-mapping.yml @@ -1,4 +1,321 @@ -name: null +name: /home/WUR/lensi010/miniconda3/envs/mapping-turkey channels: - defaults -prefix: /home/WUR/lensi010/test_pipeline/single-cell-data-processing/enter/envs/population-mapping/envs/popmap2 + - bioconda + - conda-forge +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=2_gnu + - _r-mutex=1.0.1=anacondar_1 + - aioeasywebdav=2.4.0=pyha770c72_0 + - aiohttp=3.8.4=py310h2372a71_1 + - aiosignal=1.3.1=pyhd8ed1ab_0 + - alsa-lib=1.2.9=hd590300_0 + - amply=0.1.5=pyhd8ed1ab_0 + - appdirs=1.4.4=pyh9f0ad1d_0 + - argcomplete=3.1.1=pyhd8ed1ab_0 + - async-timeout=4.0.2=pyhd8ed1ab_0 + - atk-1.0=2.38.0=hd4edc92_1 + - attmap=0.13.2=pyhd8ed1ab_0 + - attrs=23.1.0=pyh71513ae_1 + - backports=1.0=pyhd8ed1ab_3 + - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 + - bcrypt=3.2.2=py310h5764c6d_1 + - binutils_impl_linux-64=2.40=hf600244_0 + - bioconductor-biobase=2.58.0=r42ha9d7317_1 + - bioconductor-biocgenerics=0.44.0=r42hdfd78af_0 + - bioconductor-biocio=1.8.0=r42hdfd78af_0 + - bioconductor-biocparallel=1.32.5=r42hf17093f_1 + - bioconductor-biostrings=2.66.0=r42ha9d7317_1 + - bioconductor-data-packages=20230420=hdfd78af_0 + - bioconductor-delayedarray=0.24.0=r42ha9d7317_1 + - bioconductor-genomeinfodb=1.34.9=r42hdfd78af_0 + - bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0 + - bioconductor-genomicalignments=1.34.0=r42ha9d7317_1 + - bioconductor-genomicranges=1.50.0=r42ha9d7317_1 + - bioconductor-iranges=2.32.0=r42ha9d7317_1 + - bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0 + - bioconductor-noiseq=2.42.0=r42hdfd78af_0 + - bioconductor-rhtslib=2.0.0=r42ha9d7317_1 + - bioconductor-rsamtools=2.14.0=r42hf17093f_1 + - bioconductor-rtracklayer=1.58.0=r42h58c1800_2 + - bioconductor-s4vectors=0.36.0=r42ha9d7317_1 + - bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0 + - bioconductor-xvector=0.38.0=r42ha9d7317_1 + - bioconductor-zlibbioc=1.44.0=r42ha9d7317_2 + - boto3=1.26.151=pyhd8ed1ab_0 + - botocore=1.29.151=pyhd8ed1ab_0 + - brotlipy=0.7.0=py310h5764c6d_1005 + - bwa-mem2=2.2.1=hd03093a_5 + - bwidget=1.9.14=ha770c72_1 + - bzip2=1.0.8=h7f98852_4 + - c-ares=1.19.1=hd590300_0 + - ca-certificates=2023.05.30=h06a4308_0 + - cachetools=5.3.0=pyhd8ed1ab_0 + - cairo=1.16.0=hbbf8b49_1016 + - certifi=2023.5.7=pyhd8ed1ab_0 + - cffi=1.15.1=py310h255011f_3 + - charset-normalizer=3.1.0=pyhd8ed1ab_0 + - coin-or-cbc=2.10.10=h9002f0b_0 + - coin-or-cgl=0.60.7=h516709c_0 + - coin-or-clp=1.17.8=h1ee7a9c_0 + - coin-or-osi=0.108.8=ha2443b9_0 + - coin-or-utils=2.11.9=hee58242_0 + - coincbc=2.10.10=0_metapackage + - colorama=0.4.6=pyhd8ed1ab_0 + - configargparse=1.5.3=pyhd8ed1ab_0 + - connection_pool=0.0.3=pyhd3deb0d_0 + - cryptography=41.0.1=py310h75e40e8_0 + - curl=8.1.2=h409715c_0 + - datrie=0.8.2=py310h5764c6d_6 + - defusedxml=0.7.1=pyhd8ed1ab_0 + - docutils=0.20.1=py310hff52083_0 + - dropbox=11.36.0=pyhd8ed1ab_0 + - exceptiongroup=1.1.1=pyhd8ed1ab_0 + - expat=2.5.0=hcb278e6_1 + - fftw=3.3.10=nompi_hc118613_108 + - filechunkio=1.8=py_2 + - filelock=3.12.1=pyhd8ed1ab_0 + - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 + - font-ttf-inconsolata=3.000=h77eed37_0 + - font-ttf-source-code-pro=2.038=h77eed37_0 + - font-ttf-ubuntu=0.83=hab24e00_0 + - fontconfig=2.14.2=h14ed4e7_0 + - fonts-conda-ecosystem=1=0 + - fonts-conda-forge=1=0 + - freetype=2.12.1=hca18f0e_1 + - fribidi=1.0.10=h36c2ea0_0 + - frozenlist=1.3.3=py310h5764c6d_0 + - ftputil=5.0.4=pyhd8ed1ab_0 + - gcc_impl_linux-64=13.1.0=hc4be1a9_0 + - gdk-pixbuf=2.42.10=h6b639ba_2 + - gettext=0.21.1=h27087fc_0 + - gfortran_impl_linux-64=13.1.0=hd511a9b_0 + - ghostscript=9.18=1 + - giflib=5.2.1=h0b41bf4_3 + - gitdb=4.0.10=pyhd8ed1ab_0 + - gitpython=3.1.31=pyhd8ed1ab_0 + - google-api-core=2.11.0=pyhd8ed1ab_0 + - google-api-python-client=2.88.0=pyhd8ed1ab_0 + - google-auth=2.19.1=pyh1a96a4e_0 + - google-auth-httplib2=0.1.0=pyhd8ed1ab_1 + - google-cloud-core=2.3.2=pyhd8ed1ab_0 + - google-cloud-storage=2.9.0=pyh1a96a4e_0 + - google-crc32c=1.1.2=py310he8fe98e_4 + - google-resumable-media=2.5.0=pyhd8ed1ab_0 + - googleapis-common-protos=1.57.1=pyhd8ed1ab_0 + - graphite2=1.3.13=h58526e2_1001 + - graphviz=8.0.5=h28d9a01_0 + - grpcio=1.55.0=py310h1b8f574_1 + - gsl=2.7=he838d99_0 + - gtk2=2.24.33=h90689f9_2 + - gts=0.7.6=h977cf35_4 + - gxx_impl_linux-64=13.1.0=hc4be1a9_0 + - harfbuzz=7.3.0=hdb3a94d_0 + - htslib=1.17=h81da01d_2 + - httplib2=0.22.0=pyhd8ed1ab_0 + - icu=72.1=hcb278e6_0 + - idna=3.4=pyhd8ed1ab_0 + - imagemagick=7.1.1_11=pl5321hf48ede7_0 + - importlib-metadata=6.6.0=pyha770c72_0 + - importlib_resources=5.12.0=pyhd8ed1ab_0 + - iniconfig=2.0.0=pyhd8ed1ab_0 + - jbig=2.1=h7f98852_2003 + - jinja2=3.1.2=pyhd8ed1ab_1 + - jmespath=1.0.1=pyhd8ed1ab_0 + - jq=1.5=0 + - jsonschema=4.17.3=pyhd8ed1ab_0 + - jupyter_core=5.3.0=py310hff52083_0 + - kernel-headers_linux-64=2.6.32=he073ed8_15 + - keyutils=1.6.1=h166bdaf_0 + - krb5=1.20.1=h81ceb04_0 + - lcms2=2.15=haa2dc70_1 + - ld_impl_linux-64=2.40=h41732ed_0 + - lerc=4.0.0=h27087fc_0 + - libabseil=20230125.2=cxx17_h59595ed_2 + - libblas=3.9.0=17_linux64_openblas + - libcblas=3.9.0=17_linux64_openblas + - libcrc32c=1.1.2=h9c3ff4c_0 + - libcups=2.3.3=h36d4200_3 + - libcurl=8.1.2=h409715c_0 + - libdeflate=1.18=h0b41bf4_0 + - libedit=3.1.20191231=he28a2e2_2 + - libev=4.33=h516909a_1 + - libexpat=2.5.0=hcb278e6_1 + - libffi=3.4.2=h7f98852_5 + - libgcc=7.2.0=h69d50b8_2 + - libgcc-devel_linux-64=13.1.0=he3cc6c4_0 + - libgcc-ng=13.1.0=he5830b7_0 + - libgd=2.3.3=hfa28ad5_6 + - libgfortran-ng=13.1.0=h69a702a_0 + - libgfortran5=13.1.0=h15d22d2_0 + - libglib=2.76.3=hebfc3b9_0 + - libgomp=13.1.0=he5830b7_0 + - libgrpc=1.55.0=h59456c1_1 + - libiconv=1.17=h166bdaf_0 + - libjpeg-turbo=2.1.5.1=h0b41bf4_0 + - liblapack=3.9.0=17_linux64_openblas + - liblapacke=3.9.0=17_linux64_openblas + - libnghttp2=1.52.0=h61bc06f_0 + - libnsl=2.0.0=h7f98852_0 + - libopenblas=0.3.23=pthreads_h80387f5_0 + - libpng=1.6.39=h753d276_0 + - libprotobuf=4.23.2=hd1fb520_4 + - librsvg=2.56.1=h98fae49_0 + - libsanitizer=13.1.0=hfd8a6a1_0 + - libsodium=1.0.18=h36c2ea0_1 + - libsqlite=3.42.0=h2797004_0 + - libssh2=1.11.0=h0841786_0 + - libstdcxx-devel_linux-64=13.1.0=he3cc6c4_0 + - libstdcxx-ng=13.1.0=hfd8a6a1_0 + - libtiff=4.5.0=ha587672_6 + - libtool=2.4.7=h27087fc_0 + - libuuid=2.38.1=h0b41bf4_0 + - libwebp=1.3.0=hb47c5f0_0 + - libwebp-base=1.3.0=h0b41bf4_0 + - libxcb=1.15=h0b41bf4_0 + - libxml2=2.11.4=h0d562d8_0 + - libzlib=1.2.13=hd590300_5 + - logmuse=0.2.6=pyh8c360ce_0 + - make=4.3=hd18ef5c_1 + - markdown-it-py=3.0.0=pyhd8ed1ab_0 + - markupsafe=2.1.3=py310h2372a71_0 + - mdurl=0.1.0=pyhd8ed1ab_0 + - multidict=6.0.4=py310h1fa729e_0 + - nbformat=5.9.0=pyhd8ed1ab_0 + - ncurses=6.4=hcb278e6_0 + - networkx=3.1=pyhd8ed1ab_0 + - numpy=1.24.3=py310ha4c1d20_0 + - oauth2client=4.1.3=py_0 + - openjdk=20.0.0=h8e330f5_0 + - openjpeg=2.5.0=hfec8fc6_2 + - openssl=3.1.1=hd590300_1 + - packaging=23.1=pyhd8ed1ab_0 + - pandas=2.0.2=py310h7cbd5c2_0 + - pango=1.50.14=heaa33ce_1 + - parallel=20230522=ha770c72_0 + - paramiko=3.2.0=pyhd8ed1ab_0 + - pcre2=10.40=hc3806b6_0 + - peppy=0.35.5=pyhd8ed1ab_0 + - perl=5.32.1=2_h7f98852_perl5 + - pip=23.1.2=pyhd8ed1ab_0 + - pixman=0.40.0=h36c2ea0_0 + - pkg-config=0.29.2=h36c2ea0_1008 + - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0 + - platformdirs=3.5.3=pyhd8ed1ab_0 + - pluggy=1.0.0=pyhd8ed1ab_5 + - ply=3.11=py_1 + - prettytable=3.7.0=pyhd8ed1ab_0 + - protobuf=4.23.2=py310hb875b13_1 + - psutil=5.9.5=py310h1fa729e_0 + - pthread-stubs=0.4=h36c2ea0_1001 + - pulp=2.7.0=py310hff52083_0 + - pyasn1=0.4.8=py_0 + - pyasn1-modules=0.2.7=py_0 + - pycparser=2.21=pyhd8ed1ab_0 + - pygments=2.15.1=pyhd8ed1ab_0 + - pygraphviz=1.11=py310h91ff30a_0 + - pynacl=1.5.0=py310h5764c6d_2 + - pyopenssl=23.2.0=pyhd8ed1ab_1 + - pyparsing=3.0.9=pyhd8ed1ab_0 + - pyrsistent=0.19.3=py310h1fa729e_0 + - pysftp=0.2.9=py_1 + - pysocks=1.7.1=pyha2e5f31_6 + - pytest=7.3.2=pyhd8ed1ab_0 + - python=3.10.11=he550d4f_0_cpython + - python-dateutil=2.8.2=pyhd8ed1ab_0 + - python-fastjsonschema=2.17.1=pyhd8ed1ab_0 + - python-irodsclient=1.1.8=pyhd8ed1ab_0 + - python-tzdata=2023.3=pyhd8ed1ab_0 + - python_abi=3.10=3_cp310 + - pytz=2023.3=pyhd8ed1ab_0 + - pyu2f=0.1.5=pyhd8ed1ab_0 + - pyyaml=6.0=py310h5764c6d_5 + - qualimap=2.2.2d=hdfd78af_2 + - r-base=4.2.3=hfabd6f2_3 + - r-bh=1.81.0_1=r42hc72bb7e_1 + - r-bitops=1.0_7=r42h57805ef_2 + - r-codetools=0.2_19=r42hc72bb7e_1 + - r-cpp11=0.4.3=r42hc72bb7e_1 + - r-crayon=1.5.2=r42hc72bb7e_2 + - r-formatr=1.14=r42hc72bb7e_1 + - r-futile.logger=1.4.3=r42hc72bb7e_1005 + - r-futile.options=1.0.1=r42hc72bb7e_1004 + - r-getopt=1.20.3=r42ha770c72_4 + - r-lambda.r=1.2.4=r42hc72bb7e_3 + - r-lattice=0.21_8=r42h57805ef_1 + - r-matrix=1.5_4.1=r42h316c678_1 + - r-matrixstats=1.0.0=r42h57805ef_1 + - r-optparse=1.7.3=r42hc72bb7e_2 + - r-rcurl=1.98_1.12=r42hf9611b0_2 + - r-restfulr=0.0.15=r42h56115f1_2 + - r-rjson=0.2.21=r42ha503ecb_3 + - r-snow=0.4_4=r42hc72bb7e_2 + - r-xml=3.99_0.14=r42hc38eee6_2 + - r-yaml=2.3.7=r42h57805ef_1 + - ratelimiter=1.2.0=pyhd8ed1ab_1003 + - re2=2023.03.02=h8c504da_0 + - readline=8.2=h8228510_1 + - requests=2.31.0=pyhd8ed1ab_0 + - rich=13.4.2=pyhd8ed1ab_0 + - rsa=4.9=pyhd8ed1ab_0 + - s3transfer=0.6.1=pyhd8ed1ab_0 + - samblaster=0.1.26=h4ac6f70_4 + - samtools=1.17=hd87286a_1 + - sed=4.8=he412f7d_0 + - setuptools=67.7.2=pyhd8ed1ab_0 + - setuptools-scm=7.1.0=pyhd8ed1ab_0 + - six=1.16.0=pyh6c4a22f_0 + - slacker=0.14.0=py_0 + - smart_open=6.3.0=pyhd8ed1ab_1 + - smmap=3.0.5=pyh44b312d_0 + - snakemake=6.5.3=hdfd78af_0 + - snakemake-minimal=6.5.3=pyhdfd78af_0 + - stone=3.3.1=pyhd8ed1ab_0 + - stopit=1.1.2=py_0 + - sysroot_linux-64=2.12=he073ed8_15 + - tabulate=0.8.10=py310h06a4308_0 + - tk=8.6.12=h27826a3_0 + - tktable=2.10=hb7b940f_3 + - toml=0.10.2=pyhd8ed1ab_0 + - tomli=2.0.1=pyhd8ed1ab_0 + - tomlkit=0.11.8=pyha770c72_0 + - toposort=1.10=pyhd8ed1ab_0 + - traitlets=5.9.0=pyhd8ed1ab_0 + - typing-extensions=4.6.3=hd8ed1ab_0 + - typing_extensions=4.6.3=pyha770c72_0 + - tzdata=2023c=h71feb2d_0 + - ubiquerg=0.6.2=pyhd8ed1ab_0 + - uritemplate=4.1.1=pyhd8ed1ab_0 + - urllib3=1.26.15=pyhd8ed1ab_0 + - veracitools=0.1.3=py_0 + - wcwidth=0.2.6=pyhd8ed1ab_0 + - wheel=0.40.0=pyhd8ed1ab_0 + - wrapt=1.15.0=py310h1fa729e_0 + - xmltodict=0.13.0=pyhd8ed1ab_0 + - xorg-fixesproto=5.0=h7f98852_1002 + - xorg-inputproto=2.3.2=h7f98852_1002 + - xorg-kbproto=1.0.7=h7f98852_1002 + - xorg-libice=1.0.10=h7f98852_0 + - xorg-libsm=1.2.3=hd9c2040_1000 + - xorg-libx11=1.8.5=h8ee46fc_0 + - xorg-libxau=1.0.11=hd590300_0 + - xorg-libxdmcp=1.1.3=h7f98852_0 + - xorg-libxext=1.3.4=h0b41bf4_2 + - xorg-libxfixes=5.0.3=h7f98852_1004 + - xorg-libxi=1.7.10=h7f98852_0 + - xorg-libxrender=0.9.10=h7f98852_1003 + - xorg-libxt=1.3.0=hd590300_0 + - xorg-libxtst=1.2.3=h7f98852_1002 + - xorg-recordproto=1.14.2=h7f98852_1002 + - xorg-renderproto=0.11.1=h7f98852_1002 + - xorg-xextproto=7.3.0=h0b41bf4_1003 + - xorg-xproto=7.0.31=h7f98852_1007 + - xz=5.2.6=h166bdaf_0 + - yaml=0.2.5=h7f98852_2 + - yarl=1.9.2=py310h2372a71_0 + - yq=3.2.2=pyhd8ed1ab_0 + - zipp=3.15.0=pyhd8ed1ab_0 + - zlib=1.2.13=hd590300_5 + - zstd=1.5.2=h3eb15da_6 +prefix: /home/WUR/lensi010/miniconda3/envs/mapping-turkey