Branches · He, Xinyi1 / PanTools · GitLab

Snippets Groups Projects

release_v4.2.3

a061dfd6 · updated version number · 1 year ago

2

67
Download source code

zip
tar.gz
tar.bz2
tar
Compare
update_dependencies_pantools

c39d628d · Merge branch 'develop' into update_dependencies_pantools · 1 year ago

2

105
Download source code

zip
tar.gz
tar.bz2
tar
Compare
develop

ac242807 · Merge branch 'reduce_logging_build_pangenome_connect' into 'develop' · 1 year ago

2

66
Download source code

zip
tar.gz
tar.bz2
tar
Compare
phased_pangenomics_restructure

b847ded1 · renamed some packages · 1 year ago

2

359
Download source code

zip
tar.gz
tar.bz2
tar
Compare
phased_pangenomics

b608623d · kmc now uses given threads instead of % cores, added --threads option to add_genomes · 1 year ago

2

350
Download source code

zip
tar.gz
tar.bz2
tar
Compare
pantools_v4 default protected

03a8bf66 · Merge branch 'release_v4.2.2' into 'pantools_v4' · 2 years ago
Download source code

zip
tar.gz
tar.bz2
tar
fix-core-phylogeny-mode

2ef0ac44 · Fixed --mode argument from core_phylogeny being ignored · 2 years ago

18

1
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add_gfa_export

35ac5738 · Merge branch 'develop' into add_gfa_export · 2 years ago

18

17
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add_promoter_sequence_analysis

0e397a8c · skip writing sequence if has length 0 for add_variants to prevent mistakes · 2 years ago

65

22
Download source code

zip
tar.gz
tar.bz2
tar
Compare
eggnog_fix

414d9f0a · handling changed column name in eggnog-mapper output · 2 years ago

83

1
Download source code

zip
tar.gz
tar.bz2
tar
Compare
get_hm_groups_from_genes_of_interest

3ae281b4 · Added warning if a genes was not found in the graph db · 2 years ago

125

7
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add-logging

62a53634 · Added one more newline before final logging in pantools group · 2 years ago

125

16
Download source code

zip
tar.gz
tar.bz2
tar
Compare
remove_genomes

acf5a6a0 · When removing genomes, also try to merge when a color is removed from an edge. · 2 years ago

411

13
Download source code

zip
tar.gz
tar.bz2
tar
Compare
single-seqalign-class

9e606db8 · Improved SequenceAlignment test and re-enabled pangenome tests. · 2 years ago

397

7
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add_panva_queries

78a70f43 · Added panva utility function to get similarity scores fro the graph · 2 years ago

397

1
Download source code

zip
tar.gz
tar.bz2
tar
Compare
automatic_skip_core_phylogeny_fix

f9ac1240 · Resolved issue in core_phylogeny when skipping genomes · 2 years ago

425

1
Download source code

zip
tar.gz
tar.bz2
tar
Compare
split_classification_busco

3ca33794 · Removed v3 code artifacts, added log4j to busco_protein · 2 years ago

425

2
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add-phenotype-to-consensus-tree

69122453 · Added --phenotype flag to ConsensusTree.java · 2 years ago

442

1
Download source code

zip
tar.gz
tar.bz2
tar
Compare
add-progress-bars

fd67c635 · Reformatted Classification.countCogForMetrics and added a progress bar · 2 years ago

470

18
Download source code

zip
tar.gz
tar.bz2
tar
Compare
release_v4.0.0

db13fd1a · Removed copied reference to read the docs manual · 2 years ago

574

0
Download source code

zip
tar.gz
tar.bz2
tar
Compare

Prev
1
2
Next