Skip to content
GitLab
Explore
Sign in
He, Xinyi1
PanTools
Repository
Branches
Overview
Active
Stale
All
release_v4.2.3
a061dfd6
·
updated version number
·
Sep 01, 2023
update_dependencies_pantools
c39d628d
·
Merge branch 'develop' into update_dependencies_pantools
·
Sep 01, 2023
develop
ac242807
·
Merge branch 'reduce_logging_build_pangenome_connect' into 'develop'
·
Sep 01, 2023
phased_pangenomics_restructure
b847ded1
·
renamed some packages
·
Aug 28, 2023
phased_pangenomics
b608623d
·
kmc now uses given threads instead of % cores, added --threads option to add_genomes
·
Aug 11, 2023
pantools_v4
default
protected
03a8bf66
·
Merge branch 'release_v4.2.2' into 'pantools_v4'
·
Jun 23, 2023
fix-core-phylogeny-mode
2ef0ac44
·
Fixed --mode argument from core_phylogeny being ignored
·
Jun 13, 2023
add_gfa_export
35ac5738
·
Merge branch 'develop' into add_gfa_export
·
Jun 13, 2023
add_promoter_sequence_analysis
0e397a8c
·
skip writing sequence if has length 0 for add_variants to prevent mistakes
·
May 16, 2023
eggnog_fix
414d9f0a
·
handling changed column name in eggnog-mapper output
·
Apr 26, 2023
get_hm_groups_from_genes_of_interest
3ae281b4
·
Added warning if a genes was not found in the graph db
·
Apr 14, 2023
add-logging
62a53634
·
Added one more newline before final logging in pantools group
·
Apr 03, 2023
remove_genomes
acf5a6a0
·
When removing genomes, also try to merge when a color is removed from an edge.
·
Mar 31, 2023
single-seqalign-class
9e606db8
·
Improved SequenceAlignment test and re-enabled pangenome tests.
·
Mar 30, 2023
add_panva_queries
78a70f43
·
Added panva utility function to get similarity scores fro the graph
·
Mar 27, 2023
automatic_skip_core_phylogeny_fix
f9ac1240
·
Resolved issue in core_phylogeny when skipping genomes
·
Mar 09, 2023
split_classification_busco
3ca33794
·
Removed v3 code artifacts, added log4j to busco_protein
·
Mar 03, 2023
add-phenotype-to-consensus-tree
69122453
·
Added --phenotype flag to ConsensusTree.java
·
Feb 20, 2023
add-progress-bars
fd67c635
·
Reformatted Classification.countCogForMetrics and added a progress bar
·
Jan 30, 2023
release_v4.0.0
db13fd1a
·
Removed copied reference to read the docs manual
·
Dec 21, 2022
Prev
1
2
Next