Merge branch 'release_v4.2.2' into 'pantools_v4'

.gitlab-ci.yml

CHANGELOG.md

docs/source/conf.py

docs/source/user_guide/explore.rst

docs/source/user_guide/mapping.rst

pom.xml

src/main/java/nl/wur/bif/pantools/cli/ANI.java

src/main/java/nl/wur/bif/pantools/cli/AddAnnotations.java

src/main/java/nl/wur/bif/pantools/cli/AddAntiSMASH.java

src/main/java/nl/wur/bif/pantools/cli/AddFunctions.java

src/main/java/nl/wur/bif/pantools/cli/AddGenomes.java

src/main/java/nl/wur/bif/pantools/cli/AddPhenotypes.java

src/main/java/nl/wur/bif/pantools/cli/BuildPangenome.java

src/main/java/nl/wur/bif/pantools/cli/BuildPanproteome.java

src/main/java/nl/wur/bif/pantools/cli/BuscoProtein.java

src/main/java/nl/wur/bif/pantools/cli/ChangeGrouping.java

src/main/java/nl/wur/bif/pantools/cli/CompareGO.java

src/main/java/nl/wur/bif/pantools/cli/ConsensusTree.java

src/main/java/nl/wur/bif/pantools/cli/CorePhylogeny.java

...in/java/nl/wur/bif/pantools/cli/CoreUniqueThresholds.java