Explore projects

CNN methods that estimate the diameter of the crop, even when it's occluded.

Multi Reclass Tool for geospatial rasters.

R toolkit for working with variant data

Het MNP model zelf.

A bunch of Python scripts used to make life easier when segmenting many callus images.

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

Arabidopsis eQTL analysis platform

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

TrakCoreLib is a Python library that provide core modules for image processing, camera model and calibration, 2d and 3d tracking, etc..

This is accompanied code for food extrudability assessment and prediction for an ongoing study from the Food Process Engineering Group at Wageningen University

Family-based estimation of polyploid haplotypes using short sequence reads