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Durairaj, Janani
caretta
Commits
e8d4002a
Commit
e8d4002a
authored
5 years ago
by
Akdel, Mehmet
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Merge branch 'akdel001-master-patch-82787' into 'master'
Update README.md See merge request
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e8d4002a
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@@ -8,8 +8,18 @@ The command-line tool and self-hosted web application do not have this restricti
## Installation
### Requirements
#### Operating system support
1.
Linux and Mac
All capabilities are supported
2.
Windows
The external tool
**msms**
is not available in Windows. Due to this:
*
Feature extraction is not available.
*
`extract-all-features`
argument in caretta-cli should be always False.
*
`caretta-app`
is not available.
#### Software
Caretta works with Python 3.7+
Run the following commands to install required external dependencies:
Run the following commands to install required external dependencies
(Mac and Linux only)
:
```
bash
conda
install
-c
salilab dssp
conda
install
-c
bioconda msms
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@@ -21,7 +31,7 @@ git clone https://git.wur.nl/durai001/caretta.git
cd
caretta
```
### Install both the command-line interface and the web-application:
### Install both the command-line interface and the web-application
(Mac and Linux only)
:
```
bash
pip
install
-e
".[GUI]"
```
...
...
@@ -47,7 +57,7 @@ caretta-cli input_pdb_folder
# caretta-cli -h for more options
```
### Web-application Usage
### Web-application Usage
(Mac and Linux only)
```
bash
caretta-app <host-ip> <port>
...
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