Added dynamic crop parameter in yaml file

data/mosquito_escapes/preprocessing_settings-sample_binned.yaml

@@ -40,6 +40,7 @@ protocol:
   4:
     fn: crop
     kwargs:
+      dynamic_crop: true
       delete_previous: true
       from_fn_name: sample
       from_tracks: true

data/mosquito_escapes/preprocessing_settings-selection.yaml

@@ -36,7 +36,8 @@ protocol:
   3:
     fn: crop
     kwargs:
-      from_tracks: True
+      dynamic_crop: true
+      from_tracks: true
       delete_previous: true
       from_fn_name: sample
       height_crop: 200

processes.yaml

@@ -16,6 +16,7 @@
 4:
   fn: crop
   kwargs:
+    dynamic_crop: true
     delete_previous: true
     from_fn_name: sample
     height_crop: 200

tests/test_process_batch.py

@@ -196,6 +196,8 @@ def test_batch_processing_dlc_analysis() -> None:
     img_process.analyse_dlc(dlc_cfg_path, shuffle, 0, 5, model_name, save_avi=True,
                             rec_names_to_process=rec_names_to_process, from_fn_name='save_avi', delete_previous=True)
 
+    # TODO! Make a simple example that doesn't need a Deeplabcut network
+
     # ------------------------------------------------------------------------------------------------------------------
     # Load (+ filtering and unscrambling) 2d coords from DLC
     # + Reverse processes (un-stitch, rotate back, un-crop)
@@ -203,7 +205,6 @@ def test_batch_processing_dlc_analysis() -> None:
     img_process.load_dlc(model_name, 'skeleton', dlt_path,
                          rec_names_to_process=rec_names_to_process, from_fn_name='analyse_dlc', show_plot=show_plot)
 
-    # TODO i,g process:recon"ddldc
 
 def test_batch_processing_fit_skeleton() -> None:
     """