diff --git a/data/mosquito_escapes/preprocessing_settings-sample_binned.yaml b/data/mosquito_escapes/preprocessing_settings-sample_binned.yaml index 308f210f14efcb837aef6837e783a7c181817de1..ef570e69617177650868c67b0c503cd3da9939e3 100755 --- a/data/mosquito_escapes/preprocessing_settings-sample_binned.yaml +++ b/data/mosquito_escapes/preprocessing_settings-sample_binned.yaml @@ -40,6 +40,7 @@ protocol: 4: fn: crop kwargs: + dynamic_crop: true delete_previous: true from_fn_name: sample from_tracks: true diff --git a/data/mosquito_escapes/preprocessing_settings-selection.yaml b/data/mosquito_escapes/preprocessing_settings-selection.yaml index dfe42bf4d491ace8d1efdf6bb6f36bb831f207be..11f9e94366d58dfb915f12af1740b68674f94eb8 100755 --- a/data/mosquito_escapes/preprocessing_settings-selection.yaml +++ b/data/mosquito_escapes/preprocessing_settings-selection.yaml @@ -36,7 +36,8 @@ protocol: 3: fn: crop kwargs: - from_tracks: True + dynamic_crop: true + from_tracks: true delete_previous: true from_fn_name: sample height_crop: 200 diff --git a/processes.yaml b/processes.yaml index b8611176b2ed592fc3ed20cff78911b67ae2eb78..7c2149da6ea029c3df596a2d83f5321b01959daf 100755 --- a/processes.yaml +++ b/processes.yaml @@ -16,6 +16,7 @@ 4: fn: crop kwargs: + dynamic_crop: true delete_previous: true from_fn_name: sample height_crop: 200 diff --git a/tests/test_process_batch.py b/tests/test_process_batch.py index 9e1b5c4f2dd1b4707328f90b7bd759a1b9d4f711..0be831c4c5a79f136403957032aa95d6d24da98e 100755 --- a/tests/test_process_batch.py +++ b/tests/test_process_batch.py @@ -196,6 +196,8 @@ def test_batch_processing_dlc_analysis() -> None: img_process.analyse_dlc(dlc_cfg_path, shuffle, 0, 5, model_name, save_avi=True, rec_names_to_process=rec_names_to_process, from_fn_name='save_avi', delete_previous=True) + # TODO! Make a simple example that doesn't need a Deeplabcut network + # ------------------------------------------------------------------------------------------------------------------ # Load (+ filtering and unscrambling) 2d coords from DLC # + Reverse processes (un-stitch, rotate back, un-crop) @@ -203,7 +205,6 @@ def test_batch_processing_dlc_analysis() -> None: img_process.load_dlc(model_name, 'skeleton', dlt_path, rec_names_to_process=rec_names_to_process, from_fn_name='analyse_dlc', show_plot=show_plot) - # TODO i,g process:recon"ddldc def test_batch_processing_fit_skeleton() -> None: """