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Created date
update develop with hotfix
!210
· created
Nov 23, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 23, 2023
Replaced all remaining occurrences of move_grouping to deactivate_grouping.
!209
· created
Nov 23, 2023
by
Robin van Esch
Merged
Approved
0
updated
Nov 23, 2023
merge Release v4.3.0 back to develop
!208
· created
Nov 23, 2023
by
Robin van Esch
develop
Merged
Approved
0
updated
Nov 23, 2023
Add phasing functionalities and variation to pantools v4
!207
· created
Nov 23, 2023
by
Robin van Esch
Merged
Approved
0
updated
Nov 23, 2023
Fix phenotype overview order
!206
· created
Nov 21, 2023
by
Robin van Esch
develop
Merged
0
updated
Nov 21, 2023
Fix `--seed` for `pantools pangenome_structure`
!205
· created
Nov 21, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 21, 2023
update reference version for ci pipeline
!204
· created
Nov 21, 2023
by
Robin van Esch
develop
Merged
Approved
1
updated
Nov 21, 2023
update KMC to version >=3.1.0
!203
· created
Nov 20, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
4
updated
Nov 21, 2023
Msa var inf positions optimalization
!202
· created
Nov 16, 2023
by
Robin van Esch
develop
Merged
Approved
5
updated
Nov 24, 2023
Documentation shuffle
!201
· created
Nov 14, 2023
by
Robin van Esch
develop
Merged
Approved
51
updated
Nov 23, 2023
Fix mode case insensitivity for ANI
!200
· created
Nov 13, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 14, 2023
Add subgraph retrieval to GFA import/export
!199
· created
Oct 17, 2023
by
Workum, Dirk-Jan van
add_gfa_export
Merged
0
updated
Nov 14, 2023
Draft: construct pangenome database from GFA
1 of 3 checklist items completed
!198
· created
Oct 13, 2023
by
Workum, Dirk-Jan van
add_gfa_export
0
updated
May 01, 2024
Fixed ignoring untrimmed MSA for core_phylogeny and consensus_tree
!197
· created
Oct 03, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
4
updated
Oct 06, 2023
Fix distinct count kmers in kmer_classification for subsets of genomes
!196
· created
Sep 22, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Sep 22, 2023
Restore the use of MSA for phylogenetics
4 of 4 checklist items completed
!195
· created
Sep 05, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
21
updated
Oct 03, 2023
release 4.2.3 with several bugfixes
!194
· created
Sep 01, 2023
by
Robin van Esch
Merged
Approved
0
updated
Sep 22, 2023
updated version number for new release
!193
· created
Sep 01, 2023
by
Robin van Esch
develop
Merged
0
updated
Sep 22, 2023
Reduce build_pangenome logging
!192
· created
Sep 01, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Sep 01, 2023
Kmc now uses threads instead of cores
!191
· created
Aug 28, 2023
by
Robin van Esch
develop
bug
Merged
Approved
1
updated
Aug 29, 2023
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