release 4.2.3 with several bugfixes

requested review from @smit089

assigned to @worku005

added 18 commits

• a061dfd6...b24f6b78 - 8 earlier commits
• 5949a2db - implementing feedback from merge request
• 5c378c33 - simplifying trimming and aligning logic in MSA
• 18b1d52b - fix variant msa output location
• b57095aa - restore use of variants for core_phylogeny
• 1f78b5df - TEMPORARILY remove trimmed.info comparison from CI pipeline
• ba0fd5c4 - nucleotide alignment is now based on CDS instead of full mRNA sequence
• 35b2e34c - update MSA documentation to clarify mRNA/CDS distinction
• 1eeb08b3 - remove unused option from core_phylogeny CLI
• cb18cffc - Merge branch 'restore_msa_for_phylogenetics' into 'develop'
• 07790924 - Merge branch 'develop' into release_v4.2.3

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added 5 commits

• 22d072ce - make sure skip array is used for distinct kmers
• b6783073 - don't count distinct kmers multiple times per genome
• 6f3d1231 - update changelog
• f38b47ee - Merge branch 'fix_distinct_count_kmers' into 'develop'
• 32f43fbc - Merge branch 'develop' into release_v4.2.3

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added 1 commit

• 4da02ec3 - update MSA documentation

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added 1 commit

• 2ff6871c - update date release v4.2.3

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marked this merge request as ready

approved this merge request

merged

mentioned in commit db033e56