Commits · 50694a86f169c3a41893638fcdeec3de21fc1916 · bioinformatics / PanTools · GitLab

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Jan 27, 2023
- create v4.1.1 · 50694a86
  Workum, Dirk-Jan van authored 2 years ago
  
  50694a86
- Merge branch 'add-scoring-matrices-as-files' into 'develop' · 54cc342f
  Workum, Dirk-Jan van authored 2 years ago
  54cc342f
- storing scoring matrices as resource files · ca65b981
  Robin van Esch authored 2 years ago and Workum, Dirk-Jan van committed 2 years ago
  
  ca65b981
- Merge branch 'fix_nullpointerexception_remove_grouping' into 'develop' · 534e27b6
  Workum, Dirk-Jan van authored 2 years ago
  534e27b6
- Fix NullPointerException in `remove_grouping` · f2119a14
  Workum, Dirk-Jan van authored 2 years ago
  
  f2119a14
- Merge branch 'add_workflows_to_readthedocs' into 'develop' · 899fe1f8
  Workum, Dirk-Jan van authored 2 years ago
  899fe1f8
- Add PanTools workflows to read the docs · 82b237cd
  Workum, Dirk-Jan van authored 2 years ago
  
  82b237cd
Jan 24, 2023
- Merge branch 'fix_functional_databases_version' into 'develop' · b12fc63b
  Workum, Dirk-Jan van authored 2 years ago
  b12fc63b
- Fix functional databases version table in documentation · ff1a2b66
  Workum, Dirk-Jan van authored 2 years ago
  
  ff1a2b66
Jan 18, 2023
- Merge branch 'fix_hardcoded_pantools_target_dir' into 'develop' · a6d8d4aa
  Workum, Dirk-Jan van authored 2 years ago
  a6d8d4aa
- final typo fix · 6d44dcac
  Workum, Dirk-Jan van authored 2 years ago
  
  6d44dcac
- forgot to revert one progress bar in classification · f4a88e88
  Workum, Dirk-Jan van authored 2 years ago
  
  f4a88e88
- fix type in TIGRFAM file checks and remove blank lines from progress output · d4b4cf9a
  Workum, Dirk-Jan van authored 2 years ago
  
  d4b4cf9a
- add print statements back for progress · 3f63e12f
  Workum, Dirk-Jan van authored 2 years ago
  
  3f63e12f
- fix typo in functional classification · 0e8faf2b
  Workum, Dirk-Jan van authored 2 years ago
  
  0e8faf2b
- fix typos and other suggestions from git push origin -d update_pantools_to_v4.1.0 · 85cebea8
  Workum, Dirk-Jan van authored 2 years ago
  
  85cebea8
- Merge branch 'fix_cleanup_aster_in_idea_folder' into 'develop' · e8990378
  Workum, Dirk-Jan van authored 2 years ago
  e8990378
- Remove existence of ASTER from .idea folder · 8d03c35c
  Workum, Dirk-Jan van authored 2 years ago
  
  8d03c35c
Jan 13, 2023
- removed download date functional databases since no longer relevant · c07b6e09
  Workum, Dirk-Jan van authored 2 years ago
  
  c07b6e09
Jan 12, 2023
- replace /YOUR_PATH/ by /path/to/ in documentation · b508c42e
  Workum, Dirk-Jan van authored 2 years ago
  
  b508c42e
- add check for existence of database after download · d274c2db
  Workum, Dirk-Jan van authored 2 years ago
  
  d274c2db
Jan 11, 2023
- removed last mentions in documentation and code to existence of addons and target directory · b2a5e16d
  Workum, Dirk-Jan van authored 2 years ago
  
  b2a5e16d
Jan 10, 2023
- merge develop into fix_hardcoded_pantools_target_dir · 71b35110
  Workum, Dirk-Jan van authored 2 years ago
  
  71b35110
- Merge branch 'fix_alt_id_go_nodes' into 'develop' · c7a337fb
  Workum, Dirk-Jan van authored 2 years ago
  c7a337fb
- Fix the 'alt_id' property of GO function nodes · 626f4b7c
  Workum, Dirk-Jan van authored 2 years ago
  
  626f4b7c
- update documentation with change of making functional databases directory optional · 08bb0f81
  Workum, Dirk-Jan van authored 2 years ago
  
  08bb0f81
- update example commands for add_functions · 04b665d5
  Workum, Dirk-Jan van authored 2 years ago
  
  04b665d5
- making functional annotations databases directory optional with default location · 1c40dc74
  Workum, Dirk-Jan van authored 2 years ago
  
  1c40dc74
- updating documentation for add_functions -D · 9cfee7d2
  Workum, Dirk-Jan van authored 2 years ago
  
  9cfee7d2
- update CHANGELOG · 0776d21e
  Workum, Dirk-Jan van authored 2 years ago
  
  0776d21e
- fixed some ugly lines of code · 878270b3
  Workum, Dirk-Jan van authored 2 years ago
  
  878270b3
Jan 09, 2023
- merge develop into fix_hardcoded_pantools_target_dir · bc3d1a55
  Workum, Dirk-Jan van authored 2 years ago
  
  bc3d1a55
- found bug with alt_id for GO nodes · a1c7f716
  Workum, Dirk-Jan van authored 2 years ago
  
  a1c7f716
- replace print statements with logging · 61184f06
  Workum, Dirk-Jan van authored 2 years ago
  
  61184f06
- fixed tigrfam decompression · f69aa6de
  Workum, Dirk-Jan van authored 2 years ago
  
  f69aa6de
- removing global parameters from add_functions · 1d165809
  Workum, Dirk-Jan van authored 2 years ago
  
  1d165809
- replace functional database download script by automated downloading · 1e761de9
  Workum, Dirk-Jan van authored 2 years ago
  
  1e761de9
- Merge branch 'add-pattern-map-validator' into 'develop' · d88e829f
  Workum, Dirk-Jan van authored 2 years ago
  d88e829f
- Add --read-group option · 5b73d754
  Ahmed, Nauman authored 2 years ago and Workum, Dirk-Jan van committed 2 years ago
  
  5b73d754
Jan 06, 2023
- removed global pantools_path from pantools code base · 85e09455
  Workum, Dirk-Jan van authored 2 years ago
  
  85e09455