Commits · 3d744f9c1f1b72b73f1ac3ff9e41d6d0e4c2835c · bioinformatics / PanTools · GitLab

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Feb 18, 2022
- Merge branch 'pre-commit-hooks' into 'master' · 3d744f9c
  Jonkheer, Eef authored 3 years ago
  3d744f9c
- Merge branch 'maven-enforcer' into 'master' · 3dd6082b
  Jonkheer, Eef authored 3 years ago
  3dd6082b
Feb 11, 2022
- Merge branch 'contributing' into 'master' · 57a7c192
  Workum, Dirk-Jan van authored 3 years ago
  57a7c192
- Added contributing help file including some beginner-friendly documentation on... · 628bc549
  Lankveld, Thijs van authored 3 years ago and Workum, Dirk-Jan van committed 3 years ago
  
  628bc549
- Add Maven compile pre-commit hook. · 3cd09357
  Moed, Matthijs authored 3 years ago
  
  3cd09357
- Add Maven compile pre-commit hook. · b407d77f
  Moed, Matthijs authored 3 years ago
  
  b407d77f
- Fix Maven version in enforcement. · 3cc609c0
  Moed, Matthijs authored 3 years ago
  
  3cc609c0
- Add Maven enforcer plugin to validate JDK and Maven versions. · 325a4dc7
  Moed, Matthijs authored 3 years ago
  
  325a4dc7
Jan 31, 2022
- Merge branch 'busco_edge_orientation' into 'master' · 604f29de
  Jonkheer, Eef authored 3 years ago
  604f29de
Jan 28, 2022
- Changed the orientation of the 'has_busco' relationship · 978db0cd
  Eef Jonkheer authored 3 years ago
  
  978db0cd
- Merge branch 'copy-dependencies' into 'master' · 6e1c7286
  Workum, Dirk-Jan van authored 3 years ago
  6e1c7286
- Add copy-dependencies plugin goal. · 7e462bd1
  Moed, Matthijs authored 3 years ago
  
  7e462bd1
Jan 26, 2022
- Merge branch 'make_astral_submodule' into 'master' · 5475408b
  Workum, Dirk-Jan van authored 3 years ago
  5475408b
- Make ASTRAL submodule · d4409431
  Workum, Dirk-Jan van authored 3 years ago
  
  d4409431
Jan 24, 2022
- Merge branch 'add_conda_yaml' into 'master' · b0767000
  Jonkheer, Eef authored 3 years ago
  b0767000
- added conda environment yaml file · 54d2770d
  Workum, Dirk-Jan van authored 3 years ago
  
  54d2770d
Jan 18, 2022
- Merge branch 'skip_seq_kmer_classification' into 'master' · c3cb961e
  Jonkheer, Eef authored 3 years ago
  c3cb961e
- Resolved an issue in kmer_classification when skipping certain sequences · 4f5c56e1
  Jonkheer, Eef authored 3 years ago
  
  4f5c56e1
Jan 07, 2022
- Merge branch 'update_retrieve_features' into 'master' · 391730ba
  Jonkheer, Eef authored 3 years ago
  391730ba
- Removed file used for a backup · 1440d539
  Jonkheer, Eef authored 3 years ago
  
  1440d539
- Resolved merge conflict with master · c5e7db98
  Jonkheer, Eef authored 3 years ago
  
  c5e7db98
- Updated the global --help · d60d6b5a
  Jonkheer, Eef authored 3 years ago
  
  d60d6b5a
- Integrated 'retrieve_genomes' with 'retrieve_regions' · d823fdf5
  Jonkheer, Eef authored 3 years ago
  
  d823fdf5
- Delete BACKUP_project.properties · 49ef6cc1
  Jonkheer, Eef authored 3 years ago
  
  49ef6cc1
- Revert "start of including variation in pangenome" · 3b9c2e3a
  Workum, Dirk-Jan van authored 3 years ago
  3b9c2e3a
- start of including variation in pangenome · 3eb30df5
  Workum, Dirk-Jan van authored 3 years ago
  
  3eb30df5
Jan 06, 2022
- Added README to empty java_libraries directory · 2b567340
  Jonkheer, Eef authored 3 years ago
  
  2b567340
- 'retrieve_features' now also works with --skip and --reference · 7999e76a
  Jonkheer, Eef authored 3 years ago
  
  7999e76a
Jan 05, 2022
- Merge branch 'bugfix_core_snp_nj_tree' into 'master' · 4e5eb49c
  Jonkheer, Eef authored 3 years ago
  4e5eb49c
- Added README in empty java_libraries directory · 4d964bd0
  Jonkheer, Eef authored 3 years ago
  
  4d964bd0
- The interpro.xml file is now optional for 'add_functions' · 75c31643
  Jonkheer, Eef authored 3 years ago
  
  75c31643
- Can now correctly find the 'addons' directory when the code is compiled with Maven · 227f7531
  Jonkheer, Eef authored 3 years ago
  
  227f7531
Jan 03, 2022
- update to .gitignore to prevent adding .jar files to repository · 48bb1e63
  Jonkheer, Eef authored 3 years ago
  
  48bb1e63
- Removing .jar files from repository · 2ff029df
  Jonkheer, Eef authored 3 years ago
  
  2ff029df
- Removed local netbeans directory from commit · 6e47e504
  Jonkheer, Eef authored 3 years ago
  
  6e47e504
- Improved print statements for alignment functions · 1b8ea880
  Jonkheer, Eef authored 3 years ago
  
  1b8ea880
- All functions now return exit code 1 when the database cannot be started · 66bc253b
  Jonkheer, Eef authored 3 years ago
  
  66bc253b
- Resolved issue where no progress bar was printed during 'pangenome_structure_genes' · 4acab6d5
  Jonkheer, Eef authored 3 years ago
  
  4acab6d5
- update to 'core_snp_tree' NJ file names · e358f5f2
  Jonkheer, Eef authored 3 years ago
  
  e358f5f2
Dec 24, 2021
- Upgrade to Neo4j 3.5.30 with Ant, fix NetBeans compilation. · 6c2bb7a4
  Moed, Matthijs authored 3 years ago
  
  6c2bb7a4