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bioinformatics
PanTools
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d2242ee1
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d2242ee1
authored
5 months ago
by
Flege, Patrick
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Updated snakemake version explicitly
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342b78a6
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!251
Create release v4.3.2
,
!228
Update tutorial
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5 months ago
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docs/source/getting_started/diy_pangenomics.rst
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docs/source/getting_started/diy_pangenomics.rst
docs/source/tutorial/tutorial_part4.rst
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docs/source/tutorial/tutorial_part4.rst
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docs/source/getting_started/diy_pangenomics.rst
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d2242ee1
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@@ -49,7 +49,7 @@ cause issues for tools like PanTools). This pipeline can be found at
https://github.com/PanUtils/pantools-qc-pipeline which includes a README on
how to install and run it. In summary, one needs to create a conda environment
with the most recent version of Snakemake (at the moment of writing this is
7.32.4
). Please follow the instructions on which configuration to set and
8.25.5
). Please follow the instructions on which configuration to set and
where all files should be placed.
The pipeline has four different workflows:
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docs/source/tutorial/tutorial_part4.rst
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@@ -126,7 +126,7 @@ versions <= 3.11).
.. code:: bash
$ mamba create -c conda-forge -c bioconda -n snakemake snakemake
$ mamba create -c conda-forge -c bioconda -n snakemake snakemake
=8
If you are using an ARM-based machine (such as an M4-based Mac), make sure to
make the new environment compatible with Intel-based packages.
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@@ -143,7 +143,7 @@ Please use this command to set up your environment:
.. code:: bash
$ CONDA_SUBDIR=osx-64 mamba create -c conda-forge -c bioconda -n snakemake snakemake
$ CONDA_SUBDIR=osx-64 mamba create -c conda-forge -c bioconda -n snakemake snakemake
=8
This command ensures that packages are downloaded for an Intel architecture.
Afterwards, restart your shell with the "Open using Rosetta"-setting enabled.
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