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bioinformatics
PanTools
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5b9de40e
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5b9de40e
authored
1 year ago
by
Workum, Dirk-Jan van
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add information about local setup for development to contributing
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!251
Create release v4.3.2
,
!231
Update CONTRIBUTING.md to reflect current situation
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CONTRIBUTING.md
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@@ -125,7 +125,15 @@ GitLab has a [nice introduction][gitlab-flow] to the merge request workflow, but
## Local development
You can build and run _PanTools_ locally. Please refer to the
[
manual
][
pantools-manual
]
for instructions on how to build, and run _PanTools_.
You can build and run _PanTools_ locally.
Please refer to the
[
manual
][
pantools-manual
]
for instructions on how to setup, build, and run _PanTools_.
This is a short-list of important parts of our setup:
-
We use
[
pre-commit
](
https://pre-commit.com/
)
to run checks before committing.
-
We use
[
IntelliJ IDEA
](
https://www.jetbrains.com/idea/
)
as our IDE.
-
We use
[
Maven
](
https://maven.apache.org/
)
as our build tool.
-
We use
[
log4j2
](
https://logging.apache.org/log4j/2.x/
)
for logging.
-
We use
[
ReadTheDocs
](
https://readthedocs.org/
)
for our documentation.
-
We use
[
Snakemake
](
https://snakemake.readthedocs.io/
)
for our end-to-end tests in the CI/CD pipeline.
## Git organization
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