Updated Dockerfile and requirements.yml files

CHANGELOG.md

@@ -13,6 +13,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Option in vcf_to_table.py to generate, for each variant, a list of identifiers of samples that had a non-reference call
 - Option in vcf_to_table.py to generate ID field of each variant
 
+### Changed
+- Specified conda channels in requirements.yml files to improve reproducibility
+
 ### Fixed
 - FILTER field is now correctly processed in vcf_to_table.py
 - Nextflow binary now has read permissions in the Docker image, so that it can be used by non-root users

nextflow/hecaton.nf

@@ -24,7 +24,7 @@ params.help = false
 def helpMessage() {
     log.info"""
     =========================================
-     Hecaton v0.3.0
+     Hecaton v0.4.0
     =========================================
     Usage:
     nextflow run hecaton --genome_file reference.fa --reads "prefix_{1,2}.fastq" --manta_config configManta_weight_1.py.ini --model_file model_file.pkl --output_dir results

nextflow/hecaton_no_align.nf

@@ -24,7 +24,7 @@ params.help = false
 def helpMessage() {
     log.info"""
     =========================================
-     Hecaton v0.3.0
+     Hecaton v0.4.0
     =========================================
     Usage:
     nextflow run hecaton --genome_file reference.fa --bwa_bams "*.bam" --manta_config configManta_weight_1.py.ini --model_file model_file.pkl --output_dir results