diff --git a/CHANGELOG.md b/CHANGELOG.md index 5248fbb0f47790fc0254bfc76084e25d09f5ebad..97000d5f6580b998e275e6976ff799326827122b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Option in vcf_to_table.py to generate, for each variant, a list of identifiers of samples that had a non-reference call - Option in vcf_to_table.py to generate ID field of each variant +### Changed +- Specified conda channels in requirements.yml files to improve reproducibility + ### Fixed - FILTER field is now correctly processed in vcf_to_table.py - Nextflow binary now has read permissions in the Docker image, so that it can be used by non-root users diff --git a/nextflow/hecaton.nf b/nextflow/hecaton.nf index eb0b1262d746a73b7e0eb888ce6815e9207dbd09..ac68e6e09714cd6b0311d3c553312b7181c4e3c8 100644 --- a/nextflow/hecaton.nf +++ b/nextflow/hecaton.nf @@ -24,7 +24,7 @@ params.help = false def helpMessage() { log.info""" ========================================= - Hecaton v0.3.0 + Hecaton v0.4.0 ========================================= Usage: nextflow run hecaton --genome_file reference.fa --reads "prefix_{1,2}.fastq" --manta_config configManta_weight_1.py.ini --model_file model_file.pkl --output_dir results diff --git a/nextflow/hecaton_no_align.nf b/nextflow/hecaton_no_align.nf index 1d172e5b3308ff965f6514ca653bcb3a7c09908a..72676cc43aadb5e16cd6664a573948578680e106 100644 --- a/nextflow/hecaton_no_align.nf +++ b/nextflow/hecaton_no_align.nf @@ -24,7 +24,7 @@ params.help = false def helpMessage() { log.info""" ========================================= - Hecaton v0.3.0 + Hecaton v0.4.0 ========================================= Usage: nextflow run hecaton --genome_file reference.fa --bwa_bams "*.bam" --manta_config configManta_weight_1.py.ini --model_file model_file.pkl --output_dir results