Commit 4871f635 authored by sauloal's avatar sauloal
Browse files

Merge branch 'master' of /home/aflit001/temptive/probes

parents ca9a4114 9094f064
>JBPP0904F_primer
ACGCTCGCCTTCTTCATTACC
>JBPP0904R_primer
GTGTCCCGAAGGCTAAGCAC
>JBPPH036P06F_primer
CCCTTGTTAGTGGGTATGTTGGC
>JBPPH036P06R_primer
AGTGGCTTGTTGGGTGGTTAG
>JBSC0201F_primer
CCCTTGTTAGTGGGTATGTTGGC
>JBSC0201R_primer
AGTGGCTTGTTGGGTGGTTAG
>JBPP0904F
AGCACTTTTCTACACAATTGTGGTTTCATGCGCCCCGAATACTTTAACAGCGATAAAAAAGTGCATTGTTGATGCNCGCT
GATTTNTGTAAATTTGAAAACTATAGAAAGAACTGAGTTACCTGAATGAAATCTAGACGATTTGATGTACTGTCCATCTC
CGTGTCCAACTCACTTAAGATCTTCTCCTGCAAGAACATATATTGATTTTAACTACATTTTGCTTCGGAGGAGTTTAAGC
AGAGCTGCAATTTGTTCAGTGACAAATTCAAGGAACTGGTTAAGCAGGTGGTCGCACTCACGTGTGCAAGAAGTTCATCG
TGTATGGTGAGCCCAACATCTCCAATTCTGACTACGCTGGCACTAAGCTCGTCTAGTTCTTCATCCTGTTGCCTGCACAG
ACGATCAAGAAAATACGCTTTCTGAAAGTTATACTTAAAAGCTATAAAAATGACATAGTACCATATCAAATAGATTCAAG
ATTATGCTACATCCTCTAAATTCTACGTTAATTGAAGTCTTCTCGACATAATTTAAGTGCTGGCAAAACTATACTGCTAA
TACCTTTAATAACAGGTACTAAAGGGTATTCAATACAGCATACTATTCCATGATAAATGAAGTTAAGTAGACAAACTCAG
AAAGCTAAAAAGACATGGCAGAATGGTTATGACTATGACATAAAGATCTTAGAGAGGCTGATGATACATATTATCCTCCC
CTTATAAATAAAATCAAAGGCTAGGATTCCATAGTAAAGATTGAGAAAACATTAAGATGCCTCAGAAAGATAAATGGATA
GGTGCATGCAAGATTTACAGTGAGATCGGAATAAAAATCAATTGGTAATAAAAATGACAAACAAGGATAGATGCAAAGAA
ATGGAGGGNAATATTACCCTCATAAGAAGTAATNGTCTATCTGNATNCTGATGATATGAAGTCANCATTNATCNCGGGCA
TNGTATGCATTGGGATCNCNCCTTNCCNGTNCANAANCNTGGGCAATCTCAACAGGNNCTCGCCGGNATCCCACNNCAGA
ATTANANGGTACNTGGNCCCCNTTGGACTGGTNNNCCNCC
>JBPP0904R
CANTATGNATTAAAGTTTTGTGAATCATGCTTTCTTNCCATACGAATTCTGTACAAATGATTTGAATTTCTAAAAAAGCN
ATAAACTAATGTTGAGTTGAATGCATCAAGGAGCTCATTAGATTGCCGATTTGGCTATATAAATGCCCAAATATATACTG
CACATCGGCCTTTTAATGGATATCAGCACAGGTTTGTGGTCTATTTCAAGCTACTCTCACCCTGGTCTATTCCCATGAAA
TCATGTGCCATGTTCCTCACTGTCATTCACATTTTTTTTCTTGTTTCGTGAAATGAAAGACACAAACCTATGTCTTTCCA
TTTATCAAAAGAGGATCAGTTTAGTTTGAATTTTGTGAGTTCAATTGGATTGGGATGGAATTTATCTACGAAAAGCTTAC
TTTCCAAAATTTTGACAAATCTCATTTTGTATGGGGATTTCCACAGGACCCTTTTCCTTTGTTAAGAGTTATATTTTGTT
CTCATCTCATGGATAAATGTTTCTTATCTAAAAAGAGAACTTTGAGTTCTTTGCTTTACCTGAAAAACCAACAATTCATA
TTCGAAAGGTTTAGAATGGCAATCTGGAACTCTTGTAGCAATAACAACTACCATTACAAACCTGAAGGGTAACATGGACT
TGTTAAGGTTTGATTCAGTTGGGTTTCTTTGCGTTTTTTCTCATTTCTCAGACGAGTTAGTTGTAGAAGACAGGTTGTTC
ACCTTATTTACTATAGGACTGTTAGCATTTGCACTTCTCCATTAGCTTTTAAGTATTTTAGGTTCAGCCCAGACCAAAAG
TGTTCACTTTGAACAAACATAAAGGCACATTTATGCTTAGCGTTATATATCAACAAGCAAAATACTCCTAACTCTTTTCT
GACGGGAGTCCGGGGACAATTTTGGAGTTTTNGCACTNGATATTNGTAATGCCTTCCTACTGGAGATAATATCATTGGGN
CATGTATAGGAGTATNATNNNNCTGGGAATCACCCTTCNGGGTAATNNNCATATTNNCTCGGNAAAANCCCCTTNTNGGC
TAAAGN
>JBPPH036P06F
CAACCTATCCTTTCTGGCTTGGTGCTTTCTCCTGCCCCCAGTCTATTGTGTGCTTTTATTGCAGTTGCAAGATATGCANC
CTGCCACTCCNATGCCACCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACTCC
CCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTANNCGTTATGTTATGGAATTCGAACGC
AGAATCAAATACATAGGGTGGTTTGAAAGGNTTATATGGAGAGTCATGACATTGTTNNCAGTCTGCCCAGATNAGCCTTT
GCCANCAGAAGATTCCTNCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCGGGCACATACATGGCNCTGGA
AATATTNANTTAGGGGACGTGGNNGGNGGTGGANGANAAGGGCNCGTNNACCNGGNCGANGANCNGAAGAANANCAACAA
AGNNCAANTAACTCANGACCAGACCGCCTCTTCAAAAATGAAAATGTCGGACNGGTATCAAGCTGNNGNAAAATANTGCT
ANACCCACCNNCCATGTGGGTGAACAGGNCCGCAACNAGCAAGCACNGTGNGGCANTGGAAATACNGCGGNCGGATAAGC
CCANCANCANGNAAGAACCTACTGTATCTGGGTAACGGAAGCTATAAANCTNGCCAACNGAAAAAGATGGTAAGCCNCCA
GCCCCNNAAANNACAAAGANACCCTCTACCACACAAAANNCCCGCGNTAACAGTGNANNCCCCNTTTAGGCGANNAANNA
ACGTTNNNCGGNGGNNCCTNCCCAGNGNNTTTANGAANCNNCACCCAGGGNTAAAACGAAANAANNCNCCCCAAAANANG
NGGGGGCANNNCCACNNGGGTCCCAGGGNAATCNGNGGNTCNAANANACNNGGCCCCCCATNGNNNCCCCCCCGGNANAA
AGAAAAACNAANCCCCCCNNCCCNNANANNNCCCCNCAANTATGGCAANGCNNAANGGCAACCCCNGAGNGGGNGGNNAA
TNAAANGNTTNNNCCNCGGNNNAAAGANAAAAAAAANAACNGGNNGGGCNNGCCCATNCNGGGCACNTNCCGNNNNGCGC
CAACGNGACACCANATTTTNGCCAAAGGNGCACCTCNCCNCNAAANNGCGGNCCTNAATNACAACCCGCGCGCGNNNNGG
GGNTCAGCGGCACAACAANAAAAANATTNTCNNNCNNGGGGGGGACAAACNCCCCCGTTGGTGTGTTATAAA
>JBPPH036P06R
NANTGACGACTAGGAACNCCAAAGGTTGCTATATTGCCCCTCAAATCTTTATATCCATGAATTTACAACAGAAAAATAAN
CCACTAAGTANTCTTCAAAATGGTCAGACTAGTTATACTTTCCTTTCTTTTGCATACATATAAAAGAAAATATGTGTAGC
AGAAGTGAGGCCCCAATGAAGAATTCATTGACAAGGGGTTTTATCGTGTATGAACCGTTTTGTTTTGTTCCTCAATATGA
TCTCATACTGACGGGAAATACTTGTTGAGATTGAACGGAAGAGAGTAGAATTCCTCACTTCTTGTGTCACTCTTGAAGGA
CCGGAACTTGTTCCACCACGGCTTGCCTCTGTCTTTCTTTGTCGAACTCTCCTTTTTGTGCATTGTATTGTCCAGGAAAT
AAGCCAATATGCCAGCAACAAAAGCTTCTGATGAGAAGGGCACGTTCACCATGTCGTTGAACTGAAGAATAACAACAAAG
CACAAGTAACTCTTTTCAGCCACCTCTCAAAAATGAAAATGTTAGACATGTATTAAGCTAGTGTTAATTATTGCTATACC
CATCGTCCATGTGTGTGAACAGGTCCGTAACCAGCAATCACAGTGTATTCATTGAAGTACTGCGGTACTGATAAACCCAA
AAAGATTGAAAAACCTAATATAAACTTGTTACGGAAACTATTAAGATTGCAGAACTGAAGAAAGCTTAAGCCTCCAACCC
CTACAAACAAAGAGAACAAGTAATCACTAACTCCTCATAACGTGANCCACATATTGGTAATGATCATCACACAGGGGNTN
CCCCTNGGNNTATTTACGTACCCNACATAAGCNAAGAATAGGCNATAGAGAGCGNCCTACNAANGGGGNGCTGGGAANTC
NAAGCCAAAGANGGCNCCCAAANTTTTNCCTGGAAAAANAAAANAAAAGNNGCCTNCNAGNANAAANTAACCNTGCCNAN
AAAAANGGAGCCTGGGGGGGGGGGNCGANAANTNTNCNGCCGAAAAAACCCAANAAAAAANNGTGNCCCCCCCCAAAATA
ANCTTGGGNCNGGNNNAAAATTNCCCCCNGNANNNGGNNNNNGNAAAANNCCTNNNCCCCCCCNCCGGGNTTTTNTGGNA
NCAAAACNCNNTNCNNGNCNGGGCCAANNCCCNNGGGTTNNNGGGGNNAAAAAAAAACCNNN
>JBSC0201F
NCAACTAANCTTCTGGCTTGGTGCTTCTCCTGCCCCAGTCTATTNGTTGCTTTTATTGCAGTTGCAAGATATGCAACGTG
CCACTCCNATGCCACCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACTCCCCT
CCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTTGTTATTTTATTGAATTTGAACGCAGA
ATCAAATACATAGGGTGGTTTGAAAGGTTTATATGGAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCC
ACCAGAAGATTTCTTCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCTGTTTTT
ATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAGANAANNAATNNGGAATNCTCAGNNNG
ATNCANNAGAAGAATGATNGTNCTNGCACNNCCTCATNCCGGNCTGNNACCAANATGNTCCANNATNATNATCATATGAN
GAANCNNNNNGNTGNATNNANNNNCCAAANNNNNGNNATGTNANGGAANNGGNATNNNANNGNNNNGNNNGNNCGGNNNN
GNGAANGGATNNNNNGNNTNNGNGNNNNNNNNNGNNANANNNNNNNNNNNNNNNNANGANGGNNNANANNNNNNNNNNNN
NANANNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNNNGNNNNNNNNNNNNNNNNANNNNNNGNNNNNNGNNNANNNN
NNNNNANNNNNNNNNNNGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNN
NNNNNNNNNNGNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNANNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>JBSC0201R
ANTGACGACTAGGAANCCAAAGTTGCTATATTGCCCCTCAAATCTTCATATCCATGAATTTACAACAGAAAAATAATCTA
CTAAGTANCTTCAAAATGGTCAGACTAGTTATACTTTCCTTTCTTTTGCATACATATAAAAGAAAATATGTGTAGCAGAA
GTGAGGCCCCAATGAAGAATTCATTGACAAGGGGTTTTATCGTGTATGAACCGTTTTGTTTTGTTCCTCAATATGATCTC
ATACTGACGGGAAATACTTGTTGAGATTGAACGGAAGAGAGTAGAATTCCTCACTTCTTGTGTCACTCTTGAAGGACCGG
AACTTGTTCCACCACGGCTTGCCTCTGTCTTTCTTTGTCGAACTCTCCTTTTTGTGCATTGTATTGTCCAGGAAATAAGC
CAATATGCCAGCAACAAAAGCTTCTGATGAGAAGGGCACGTTCACCATGTCGTTGAACTGAAGAATAACAACAAAGCACA
AGTAACTCTTTTCAGCCACCTCTCAAAAATGAAAATGTTAGACATGTATTAAGCTAGTGTTAATTATTGCTATACCCATC
GTCCATGTGTGTGAACAGGTCCGTAACCAGCAATCACAGTGTATTCATTGAAGTACTGCGGTACTGATAAACCCAAAAAG
ATTGAAAAACCTAATATAAACTTGTTACGGAAACTATTAAGATTGCAGAACTGAAGAAAGCTTAAGCCTCCAACCCCTAC
AAACAAAGAGAACAAGTAANCACTAACTCCTCATAACGTGAACCACATATNGGNAATGATCATCACNCAGGGGCTNCCCC
TNGTNTATNNACGTNCCCTACCNTANNCNANNGAATAGGCNANNNNAGAGGCGCCCTACCNNNGGGGTGGNNGGGNNTCN
NANNNNNANNACGGGNNCCCNANNNNNNCCTGGNAANANNAANNAAANGGGCNNTNNNNNATNANNNAACCNNGNCNNNN
NNANNNNNNNNGGGGNGNGGGGGGNNANNNNNNNNNNNNGNNNNNNNNNNNNAAANNNNNGNNNCNNNCNNNNNNNNNNN
NNNGNNNCNGGGGGNNNNNNCCCCNNNGGNNNNNGGNNNNNNNNNNNNNCNNNNNNCCCCNNNGCNNGGNNNNNNNNGNN
NNCNNNNNNNCNNNNNNNNNNNGNNCNNNNNNNNNNNGNNN
>S_lycopersicum_chromosomes.fa_SL2.40ch12_62702453_62706035_JBPP0904_Product
ACGCTCGCCTTCTTCATTACCATGCCAATCTTTTTCTACAACAAATTGTGGTTTCCATGC
GATAAGAATACAATAACAGCGATAAAAAAGTGCATTGTTGATGCGGCTGATTTAGTAAAT
TTGAAAACTATAGAAAGAACTGAGTTACCTGAATGAAATCTAGACGATTTGATGTACTGT
CCATCTCCGTGTCCAACTCACTTAAGATCTTCTCCTGCAAGAACATATATTGATTTTAAC
TACATTTTGCTTCGGAGGAGTTTAAGCAGAGCTGCAATTTGTTCAGTGACAAATTCAAGG
AACTGGTTAAGCAGGTGGTCGCACTCACGTGTGCAAGAAGTTCATCGTGTATGGTGAGCC
CAACATCTCCAATTCTGACTACGCTGGCACTAAGCTCGTCTAGTTCTTCATCCTGTTGCC
TGCACAGACGATCAAGAAAATACGCTTTCTGAAAGTTATACTTAAAAGCTATAAAAATGA
CATAGTACCATATCAAATAGATTCAAGATTATGCTACATCCTCTAAATTCTACGTTAATT
GAAGTCTTCTCGACATAATTTAAGTGCTGGCAAAACTATACTGCTAATACCTTTAATAAC
AGGTACTAAAGGGTATTCAATACAGCATACTATTCCATGATAAATGAAGTTAAGTAGACA
AACTCAGAAAGCTAAAAAGACATGGCAGAATGGTTATGACTATGACATAAAGATCTTAGA
GAGGCTGATGATACATATTATCCTCCCCTTATAAATAAAATCAAAGGCTAGGATTCCATA
GTAAAGATTGAGAAAACATTAAGATGCCTCAGAAAGATAAATGGATAGGTGCATGCAAGA
TTTACAGTGAGATCGGAATAAAAATCAATTGGTAATAAAAATGACAAACAAGGATAGATG
CAAAGAAATGGAGGGAATATTACCTCATAAGAAGTAATTGTCTATCTGATTCTGATGATA
TGAAGTCATCATTATCTCGGGCATTGTATGCATTGGATCTCTCTTTCTGTTCAGAATCTG
GCAATCTCAACAGTTCTCGCCGCATCCCACTCAGATTAGATGTACTTGTCCCATTTGACT
GTTTTCCAGCTACTACAGCTTTCTTCATGCTTCCCACCTGGTTAAAGGCAATTTGAAATC
GTTTATTTATTTTCAGGAACCAAGAAACAAAAGAATAGATATTTGGCATCAACAGAATCA
GTTATACTTGAGCACGGGCATTGCTGGTCCATCTTCTTCTCTTATCAAGCTCAATATCAT
TAATACCATACCAAGAAGGATCTCTTGCTGCAACATCAATTGTTTTGTCCAATTCATCCA
CCTTCTCATCAAGAAAACAGGAATTCAGCATTGATAAGGATATGAAGCAAGTCATAGCAG
CAGTAGATCAATATCAAATCACACTGACAGAAGAACAACTCTGGTTATGTTGCTATTGTT
CACTGAAAGAAGAACATCTTTCCCTAAGTACTAAAGTCGACAGATTGGACAGCACAAATT
CATAGACTGAACTTAAGACAGGTGCAACACATCAAACATGCAATTGTCTCTGGCTATTCA
AAATTGTCGTAATTCATTCACGTAAAGTACAGGCAATCAGGAAGAAATATAATGAGAATT
TAACAGACCAAACAGTGATAAGTATCAATTAACCAAGTTTCAAGGAGCTACGTTTCCGCA
CATACCTGCCACTCAATGCTCTCAGATGAAGCAAGAAGTTCTTTGGTAAGATGTACTTGC
TCACTACTTCCGGCAGAAGTTTGCTCCCATTGATGAAACGTGGACAAGAGCTTGTCAATC
TAACCAAGCAGGAATTTCAAGAGTTAGATTAAGTAGTCAACAAACTTGATCACATATGAG
ATCCAACAGATTCTACCAGCAAGGAGAGTCTTAGCTTATTTTTTCTTAATAGTAAAAGAG
ATGAAATTTCTTAGTTTGTTCAGCTTGTTTTTTTATTTTTTCTATGAAAATAGACAATAG
CCACAAGAAAATCATAGCTTTCTTACCTGTTAGCTGTTACTGGAGTACTTGATTTTTAAA
CCTTAGTCTCGAAGAATTATACTTTATCTCATAGAAACATTACTCACCCCCTTCCCAGAA
TGTCGAGAGAGATGGAGATAGATACATGACAGGAAACACCACCAACCCTTCATGAATCTA
TCTCCCATGCAAGAATAAGAACAACACACTAATAAAAAAAAACAAATCTCAGACGAATAA
GATTTACTTCACTTCAAGATTATTAGAACATAACTAGATCGAAGTAGATGAACTTACAGA
TTCTTGAATTTCCTCCTTGACAATATAGAAAGGATCTTGAGCTGAAGACATCTTCAACAC
CAACTGTAGAACATTTAAGTGGACACATCAGATAATTAAATAACATATATAATACATATA
AAAAGCATCAGGAGAAAGATGATCGAGAACTATATCTTATACCCAGACATTGCAAAGTAG
TACATCTCAAAATGCCTTTTCCGTAAAGTGTATTATGACAGAGAGATACAGTGGCACTTT
AGCAAGAAGGGCTTTTCCGAGAAAATATGAAAATTACCAGAAGGATGAATTCCAAGAAAA
ATAATACTCCTATACATGACCAAATGATAATTATCTCCAGTAGGAAGGCATTACAAATAT
CAAGTGCAAAAACTCAAAATTGTCCCCGGACTCCCGTCAGAAAAGAGTTAGGAGTATTTT
GCTTGTTGATATATAACGCTAAGCATAAATGTGCCTTTATGTTTGTTCAAAGTGAACACT
TTTGGTCTGGGCTGAACCTAAAATACTTAAAAGCTAATGGAGAAGTGCAAATGCTAACAG
TCCTATAGTAAATAAGGTGAACAACCTGTCTTCTACAACTAACTCGTCTGAGAAATGAGA
AAAAACGCAAAGAAACCCAACTGAATCAAACCTTAACAAGTCCATGTTACCCTTCAGGTT
TGTAATGGTAGTTGTTATTGCTACAAGAGTTCCAGATTGCCATTCTAAACCTTTCGAATA
TGAATTGTTGGTTTTTCAGGTAAAGCAAAGAACTCAAAGTTCTCTTTTTAGATAAGAAAC
ATTTATCCATGAGATGAGAACAAAATATAACTCTTAACAAAGGAAAAGGGTCCTGTGGAA
ATCCCCATACAAAATGAGATTTGTCAAAATTTTGGAAAGTAAGCTTTTCGTAGATAAATT
CCATCCCAATCCAATTGAACTCACAAAATTCAAACTAAACTGATCCTCTTTTGATAAATG
GAAAGACATAGGTTTGTGTCTTTCATTTCACGAAACAAGAAAAAAAATGTGAATGACAGT
GAGGAACATGGCACATGATTTCATGGGAATAGACCAGGGTGAGAGTAGCTTGAAATAGAC
CACAAACCTGTGCTGATATCCATTAAAAGGCCGATGTGCAGTATATATTTGGGCATTTAT
ATAGCCAAATCGGCAATCTAATGAGCTCCTTGATGCATTCAACTCAACATTAGTTTATTG
CTTTTTTAGAAATTCAAATCATTTGTACATGGTTCGTATCCAAGAAAGCATGATTCACAA
AACTTTTAATTGACATTACTGAAGTGCTTAGCCTTCGGGACAC
>S_lycopersicum_chromosomes.fa_SL2.40ch12_16714760_16716664_JBSC0201_Product
CCCTTGTTAGTGGGTATGTTGGCCAAATCTAATCTCTTTCTTGCTTGTGCTTTCTCCTGT
TTCAGTCTACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCATGCCAC
CATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACT
CCCCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTTG
TTATTTTATTGAATTTGAACGCAGAATCAAATACATAGGGTGGTTTGAAAGGTTTATATG
GAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCCACCAGAAGATTTCTT
CAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCTG
TTTTTATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAGA
CAATTAATTTGGAATTCTCAGTTTGATTCACGAGAAGAATGATTGTTCTTGCACTTCCTC
ATTCCGGTCTGTTACCAACATGCTCCATTATTATCATCATATGACGAACCTTTTTGCTGT
ATTTACTTTCCAAATTCTTGTTATGTCAGGGAATTGGCATTTTACTGTCGGGTTTGTTCG
GCACCGGGAATGGATCTTCTGTATCTGTGTAAGTACAGGCGAAATCTTCTTCAGCACAAT
AGGATGGTAGAAATTAGTTATCTAAGACGAATTAACTCTCTTCATACACATGCAGTGAAA
ATGCTGGTCTTTTAGCACTAACACGTGTTGGCAGCCGAAGAGTTGTTCAGATATCAGCAG
GGTTTATGATTTTCTTTTCAATTCTTGGTAATTTTCCTGTCCAAGTATTTTGTTGAGTAA
ATTTTCTTGATTTTCGCTGATATTTTATCCCTCCCCAGCTCCTCTTTTGCATGTTATTTA
TCTAAATGCACTTTGTTTCTTTTCAGGAAAATTTGGTGCCGTCTTTGCTTCGATTCCAGC
ACCCATTGTAGGCGCTCTCTATTGCCTATTCTTTGCTTATGTAGGTACGTAAATATACAA
GGGAAGCCCTGTGTGATGATCATTACCAATATGTGGTTCACGTTATGAGGAGTTAGTGAT
TACTTGTTCTCTTTGTTTGTAGGGGTTGGAGGCTTAAGCTTTCTTCAGTTCTGCAATCTT
AATAGTTTCCGTAACAAGTTTATATTAGGTTTTTCAATCTTTTTGGGTTTATCAGTACCG
CAGTACTTCAATGAATACACTGTGATTGCTGGTTACGGACCTGTTCACACACATGGACGA
TGGGTATAGCAATAATTAACACTAGCTTAATACATGTCTAACATTTTCATTTTTGAGAGG
TGGCTGAAAAGAGTTACTTGTGCTTTGTTGTTATTCTTCAGTTCAACGACATGGTGAACG
TGCCCTTCTCATCAGAAGCTTTTGTTGCTGGCATATTGGCTTATTTCCTGGACAATACAA
TGCACAAAAAGGAGAGTTCGACAAAGAAAGACAGAGGCAAGCCGTGGTGGAACAAGTTCC
GGTCCTTCAAGAGTGACACAAGAAGTGAGGAATTCTACTCTCTTCCGTTCAATCTCAACA
AGTATTTCCCGTCAGTATGAGATCATATTGAGGAACAAAACAAAACGGTTCATACACGAT
AAAACCCCTTGTCAATGAATTCTTCATTGGGGCCTCACTTCTGCTACACATATTTTCTTT
TATATGTATGCAAAAGAAAGGAAAGTATAACTAGTCTGACCATTTTGAAGTTACTTAGTA
AATTATTTTTCTGTTGTAAATTCATGGATATGTGGATTTGAGTAGCAATATAGCAACTTT
GGTGTTTCCTAGTCGTTGCAAAATCTAACCACCCAACAAGCCACT
#!/usr/bin/perl -w
use strict;
my $inFile = $ARGV[0];
die if ! defined $inFile;
die if ! -f $inFile;
my %res;
&readFile($inFile);
&printRes();
sub printRes() {
my $matrix = &getSubMatrix();
#$res{$lastQuery}{seq } = \@seq;
open COV, ">$inFile.cov" or die;
my $totalScore = 0;
foreach my $qry ( sort keys %res ) {
my $data = $res{$qry};
my $start = $data->{start};
my $end = $data->{end };
my $len = $end - $start + 1;
my $seq = $data->{seq };
my $seqLen = scalar @$seq;
print "query $qry\n";
print " START $start END $end LEN $len SEQLEN $seqLen\n";
my $title = "$qry $start ";
my $ref;
my $cov;
for ( my $p = 0 ; $p < $seqLen; $p++ ) {
my $nuc = $seq->[$p];
#print "NUC $nuc\n";
if ( ! defined $nuc ) {
$ref .= "-";
$cov .= "0";
print COV ($p+1), "\t0\n";
} else {
my $refNuc = uc(substr($nuc, 0, 1));
my $covNum = length($nuc ) -1;
my $covLen = length($nuc );
$ref .= $refNuc;
my $score = 0;
my $lMatrix = $matrix->{$refNuc};
for ( my $n = 1 ; $n < $covLen ; $n++ ) {
my $lNuc = uc(substr($nuc, $n, 1));
my $lScore = $lMatrix->{$lNuc};
$score += $lScore;
#print " FROM $nuc COMPARING $refNuc WITH $lNuc SCORE $lScore ( $score - $n - $covNum )\n";
#if ( $nuc eq $refNuc ) {
# $score += 1;
#}
#elsif ( $nuc eq "-" ) {
# $score += 0;
#}
#else {
# $score += -0.5;
#}
}
$cov .= $score . ",";
$totalScore += $score;
print COV ($p+1),"\t",$score,"\n";
}
}
print "$title TOTAL SCORE $totalScore\n";
if ( 0 ) {
my @ref = split(//, $ref);
my @cov = split(/,/, $cov);
#my $ref = $title;
#my $cov = " "x(length($title));
for ( my $q = 0; $q < @ref; $q+=30 ) {
my $r = $q + 30;
if ( $r > @ref ) {
$r = @ref - 1;
}
my $rf = "";
my $co = "";
for ( my $s = $q; $s < $r; $s++ ) {
$rf .= sprintf("%4s ", $ref[$s] );
$co .= sprintf("%4s ", $cov[$s] );
}
print "$rf\n$co\n";
}
}
}
close COV;
}
#sub getSubMatrix {
# #http://guinevere.otago.ac.nz/aef/MLRGD/usersguide/node18.html
# # T C A G
# my @matrix =
# (
# ( -1, .6, .2, .2 ),
# ( .6, -1, .2, .2 ),
# ( .2, .2, -1, .6 ),
# ( .2, .2, .6, -1 )
# );
# # extend open
# my @gap = ( -1, -3);
#}
sub getSubMatrix {
#http://guinevere.otago.ac.nz/aef/MLRGD/usersguide/node18.html
# T C A G
my %matrix =
( A => { A => 1.0, C => -1.0, G => 0.5, T=> -1.0, '-' => -2.0 },
C => { A => -1.0, C => 1.0, G => -1.0, T=> 0.5, '-' => -2.0 },
G => { A => 0.5, C => -1.0, G => 1.0, T=> -1.0, '-' => -2.0 },
T => { A => -1.0, C => 0.5, G => -1.0, T=> 1.0, '-' => -2.0 },
'-' => { A => -2.0, C => -2.0, G => -2.0, T=> -2.0, '-' => 1.0 },
);
return \%matrix;
}
sub readFile {
#Query= S_lycopersicum_chromosomes.fa_SL2.40ch12_62702453_62706035_JBPP
#0904_Product
# (3583 letters)
#Database: tomato
# 13 sequences; 781,666,411 total letters
#Searching..................................................done
# Score E
#Sequences producing significant alignments: (bits) Value
#SL2.40ch12 6747 0.0
#1_0 1 acgctcgccttcttcattaccatgccaatctttttctacaacaaattgtggtttccatgc 60
#12 62702453 acgctcgccttcttcattaccatgccaatctttttctacaacaaattgtggtttccatgc 62702512
#1_0 61 gataagaatacaataacagcgataaaaaagtgcattgttgatgcggctgatttagtaaat 120
#12 62702513 gataagaatacaataacagcgataaaaaagtgcattgttgatgcggctgatttagtaaat 62702572
my $infile = shift;
open IN, "<$infile" or die;
my $lastQuery = "";
while (my $l = <IN>) {
chomp $l;
#print "L $l\n";
if ( $l =~ /^Query= (.+)/ ) {
$lastQuery = $1;
print "QUERY $lastQuery\n";
while ( my $m = <IN> ) {
chomp $m;
#print "M: $m\n";
if ( $m =~ /\((\d+) letters\)/ ) {
print "SIZE $1\n";
$res{$lastQuery}{size} = $1;
last;
}
elsif ($m =~ /Length\=(\d+)$/ ) {
#Length=1089
print "SIZE $1\n";
$res{$lastQuery}{size} = $1;
last;
}
$lastQuery .= $m;
}
#print "end query\n";
my $hspLen = 0;
while ( my $n = <IN> ) {
chomp $n;
#print "N: $n\n";
if ( $n =~ /^((?:\d+|Query)_\d+)\s+(\d+)(\s+)([acgt\-\s]+)\s(\d+)/i ) {
#printf "NAME %4s START %010d END %010d SEQ '%s'\n", $1, $2, $5, $4;
my $hspName = $1;
my $hspStart = $2;
my $hspSpacing = $3;
my $hspSeq = $4;
my $hspEnd = $5;
my $hspTab = length($hspStart) + length($hspSpacing);
$res{$lastQuery}{start} = $hspStart if ! exists $res{$lastQuery}{start} || $hspStart < $res{$lastQuery}{start};
$res{$lastQuery}{end } = $hspEnd if ! exists $res{$lastQuery}{end } || $hspEnd > $res{$lastQuery}{end } ;
my @seq = split(//, $hspSeq);
$hspLen += scalar @seq;
while ( my $o = <IN> ) {
chomp $o;
if ( $o =~ /^(\d+)\s+(\d+)(\s+)([acgt\-\s]+)\s(\d+)/i ) {
#printf " HIT CHR %4s START %010d END %010d SEQ '%s'\n", $1, $2, $5, $4;
my $hitName = $1;
my $hitStart = $2;
my $hitSpacing = $3;
my $hitSeq = $4;
my $hitEnd = $5;
my $hitLen = $hitEnd - $hitStart;
my $hitTab = length($hitStart) + length($hitSpacing);
my $hitTabDiff = "."x($hitTab - $hspTab);
$hitSeq = $hitTabDiff . $hitSeq;
#print " HSP SPACING '$hspSpacing' HSP TAB LEN $hspTab HIT SPACING '$hitSpacing' HIT TAB LEN $hitTab HIT TAB DIFF '$hitTabDiff'\n";
my @hitSeq = split(//, $hitSeq);
for ( my $i = 0; $i < @hitSeq; $i++ ) {
my $hitChar = $hitSeq[$i];
if ( $hitChar =~ /[acgt-]/i ) {
$seq[$i] .= $hitChar;
}
}
} else {
last;
} # if $hit
} # while my $o
#print " PUSHING ", scalar @seq, " ($hspLen)\n";
@{$res{$lastQuery}{seq }}[$hspStart-1..$hspEnd-1] = @seq;
} # if 1_0 (reference)
last if $n =~ /Posted date\:/;
} # while my $n
} # if qry
} # while my $l (qry)
close IN;
}
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_622710_624594_ch12-sc02-1_Product
TCCCTTGTTAGTGGGTATGTTGGCCAAATCTAATCTCTTTCTTGCTTGTGCTTTCTCCTG
TTTCAGTCTACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCATGCCA
CCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAAC
TCCCCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTT
GTTATTTTATTGAATTTGAACGCAGAATCAAATACATAGGGTGGTTTGAAAGGTTTATAT
GGAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCCACCAGAAGATTTCT
TCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCT
GTTTTTATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAG
ACAATTAATTTGGAATTCTCAGTTTGATTCACGAGAAGAATGATTGTTCTTGCACTTCCT
CATTCCGGTCTGTTACCAACATGCTCCATTATTATCATCATATGACGAACCTTTTTGCTG
TATTTACTTTCCAAATTCTTGTTATGTCAGGGAATTGGCATTTTACTGTCGGGTTTGTTC
GGCACCGGGAATGGATCTTCTGTATCTGTGTAAGTACAGGCGAAATCTTCTTCAGCACAA
TAGGATGGTAGAAATTAGTTATCTAAGACGAATTAACTCTCTTCATACACATGCAGTGAA
AATGCTGGTCTTTTAGCACTAACACGTGTTGGCAGCCGAAGAGTTGTTCAGATATCAGCA
GGGTTTATGATTTTCTTTTCAATTCTTGGTAATTTTCCTGTCCAAGTATTTTGTTGAGTA
AATTTTCTTGATTTTCGCTGATATTTTATCCCTCCCCAGCTCCTCTTTTGCATGTTATTT
ATCTAAATGCACTTTGTTTCTTTTCAGGAAAATTTGGTGCCGTCTTTGCTTCGATTCCAG
CACCCATTGTAGGCGCTCTCTATTGCCTATTCTTTGCTTATGTAGGTACGTAAATATACA
AGGGAAGCCCTGTGTGATGATCATTACCAATATGTGGTTCACGTTATGAGGAGTTAGTGA
TTACTTGTTCTCTTTGTTTGTAGGGGTTGGAGGCTTAAGCTTTCTTCAGTTCTGCAATCT
TAATAGTTTCCGTAACAAGTTTATATTAGGTTTTTCAATCTTTTTGGGTTTATCAGTACC
GCAGTACTTCAATGAATACACTGTGATTGCTGGTTACGGACCTGTTCACACACATGGACG
ATGGGTATAGCAATAATTAACACTAGCTTAATACATGTCTAACATTTTCATTTTTGAGAG
GTGGCTGAAAAGAGTTACTTGTGCTTTGTTGTTATTCTTCAGTTCAACGACATGGTGAAC
GTGCCCTTCTCATCAGAAGCTTTTGTTGCTGGCATATTGGCTTATTTCCTGGACAATACA
ATGCACAAAAAGGAGAGTTCGACAAAGAAAGACAGAGGCAAGCCGTGGTGGAACAAGTTC
CGGTCCTTCAAGAGTGACACAAGAAGTGAGGAATTCTACTCTCTTCCGTTCAATCTCAAC
AAGTATTTCCCGTCAGTATGAGATCATATTGAGGAACAAAACAAAACGGTTCATACACGA
TAAAACCCCTTGTCAATGAATTCTTCATTGGGGCCTCACTTCTGCTACACATATTTTCTT
TTATATGTATGCAAAAGAAAGGAAAGTATAACTAGTCTGACCATTTTGAAGTTACTTAGT
AAATTATTTTTCTGTTGTAAATTCATGGATATGTGGATTTGAGTAGCAATATAGCAACTT
TGGTGTTTCCTAGTCGTTGCAAAAT
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_3080728_3082538_ch12-sc02-2_Product
AAGAACTCTCTTCGGGTGGAGTAATTATACTACCATATGAAACAACAATTGAACTCTTTG
ATGGAATGGTTAAGACCAACAAGCAGATAGGAAAATATCAAAAACTTGATACATAACTGA
CTCAGCTGGATATTTTGGCCAAGAAAGTCAATAAATTGAAGGCAATGTACAAAAAGAACA
ACAAATACGTTTCCCCTCACAAGCATAGAATTTCCAATGAAATATGAGGGTAGACAGGAT
GATCAGAACATCTTACTTATTTATCCCAATGTCATGGAACACGAAAGAGTGTTAAAAAAG
ATAAAGAGAGAATTTCTTGATGATGAATTAGATGACAACCTCTTATTCCATGTTCACTGA
TCTTGTAGAGTCCCAAATGGACAAGGTGTTGTCTAGTCTCTATCCAAAGCATAGAAAAGG
GTTTACTAATGAGAATGTGGAAAACCCCAATAATGAAATCTAAGTGGAGACTTGCACCAT
GCAACAATGTTAACTAAGGAGAATAATGGGAGGCAAACAAAGTTTTATAGATTTATTTTA
TAGAAAAATCGTGTGATAATTTTGTATGTTAAACTGTAGAATTTGTTAAAAGGTACAGGT
TGGCGACCCAAATTTCTACTTGGCGACTCACCAAAGAGGTCGGTGATCCCAACTTGGACC
GTTGTTGCACTCAAGAAATTCTAAAGCTGGAGTCTATAAAACTTCGTATGCCCATGAGCA
AATCAGCGTGTTGTCAAGCAGGTCGTCAACCATTAATTTGACCGCCGTTTGGGCCCTTAC
TAACTGAAGGTCATGTAGCACTCGACGAGGTAATGTCTCACTTGGTGTGTCGCCGAATGG
GGGGATGAGAAAAATTAATGCCGCCGTCGCCGAACGGGCGAGAACTATATGGTTTTAAGG
TCCAAAAGTTTAAAAGTCAAAAACCATTCAGATTCCCTTACTTTTGGATTTCCCAAACTT
GCACCCATACTATATTTTCTATATTTTTGTGTTTCTACCACTCATTAGTAATCCATTGTG
TATTTGTAATTTGATACCATTGTGGCCTAGCATTTCAACTCATTTATTTTGCTTCTAAGG
TTGGTTTTCGAAGCCTTGAACTCATATCTAGAGATTTTATTCATTTAGATTTGTGTTGAT
ATTTGTGAAGTGTGCTAGGCCTCTCTGGCTTAATTGTTTCTATTATTGTATGCTTATTTC
AATAACTTAATTTGGTGATCTCGCCTAAAATTATTTAATGTTGATTTATGGAAATTCTCA
TGCTTATGTTTGATCAACATTATTTGGTTATGATATTTTCTTGTTGGGTCAAGTCAGGTG
ATGTCTAAGAATCCAACATTTGTGTAAATGATGCACTTAGAGAAATGATGGAGCGATTAA
CGTGATTCCTAAAGGCCAAAGTCATTAAATTGATAGATTTTGTTAAACTTGTAGAAGTCT
AAGTATCCTAGGATCATGTGTAGCGTTGCTCTAAGTCTAATTGAATGAGTTCATTGTTTT
ATTTGGTTTTTTGGGGCTGCAGGGTTGTATTTCTGAAGTTAGGGTTGAGATTAGGTATGT
TAGGTCATTTGAAGAGCTGAGCCGAGCTCGCCGAACCACTTAGTGGTTTGCCAAATCCCC
CCTAATCGTCTTTCACATCAAGCAAAGTTTGAATTTTTGTGTTATAACATTCGGCGAGAA
GCCCGAGTTCACAAATTGCACTCAGATGCTCGCCAATTGTCATTTTTATCTCCCTTTTTT
CCCCCAACCCTTAAAAATGCATTGTATATTTTGGCGGGCTTGTCTTGCTCACCGAATGTT
TTCGGCAATTT
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_4093931_4095019_ch12-sc02-3_Product
AACCCTCAATACAAACATGAAAGTCACTTATTTCTACCATATTCATAGGATATCCCCCTA
TGCTATCCTCAACATTTAAAATAGAATTGAAGTCCTCCATTATTATCCATGGAAGCATGT
TACCTGCGTTCATATCATCTAAATATTTTCACAACTCTTTCCTTTCCTCTCGTGTGTTGA
AAGCATATACGACAGTTACAATATACTCCAAATTGAGGCTTTGATTTTGTATTTTACAGG
TTATCGCCTAGGCGCAACTTGCAACCATTAGCACTTGAAAGTAATCTGGCCTCCATGTTA
TCAATACCCCACTGTTATAATTGTCGACAAGATTAGTAACATAGTCCAATCCTCCAAACG
AGCTTCTATCCACCCTGTCAATATTACTCATTTTGATCTTAGTCTCTATCAAATCCACAA
ATCCAGTACTTTCTTTACTACAAAGGAGTTTTATCTCCTTTTGTTTGTTAAGAGTGGTTA
AACCCCTATAGTTCCATCACATCATGCTATCCATTCATGCTGGGAGTCGCTGTCCCTCCC
CCATTTATAGTTGTGGCCGTTGAAGGTTGTTCTTTCACTTCTTCTGTATGTAGAACCTGA
AACGTGTTCTTACGATCCACCTCTCCCTGATGAACATGCTTCTTCTGCCTATTTGGACTT
AATGACTTAGTCATTGGAGTGATCCACCCTGCTGTCCTTCCTCCTTGTACAGTTGTATCT
GTTCCAGTTTTTTCGGCTCCATCAATGACCCTATGGTTTATCATTTCAGTTTGTCTTCCT
CTGTATTGATTGTATGTCCCTCTTTATTTTTGCTTCCCTTTGTCTTTCACTATGTTTGGT
TGTTACTCTTCTCCTTTCCTTTGATCCGGAGGTGGGTTTTTCTTCGTGCAAATCCCTTCA
TCATGTCCATACTTTTTTCAAAAATTACACAGTATGGGCTTCCAATCGTACTGCACTTTT
TGTTCAATCAGCTCTCCTCTCTTATTTTTGAAGAAAACTTTATCCGGTAGTTCTGCTTTT
ATTCCACTTCTATCAGTAGCCTGACAAAACTGTGTCCTAATTTCTTTTCTGTGTTTTGGT
CCACCATTA
>S_lycopersicum_scaffolds.fa_SL2.40sc04057_3198454_3200936_ch12-sc03-1_Product
TAGGAAGCAAAGGTAGTTTGGGATGAGTAGGAAGTACAACTAAGGATAATACACAATGAT
TGGGAAGTTTTCAAATGGATAGCCAGACATCCAAGAGTTTAGGAAATTAATACCAAAACA
ATGGGGTTTGAAAGGGGAAGTAAATATTGGGTTATTAAGTAGCAAATATGTATTGATAAG
GGTCTCACTACCAGAAGATTATGTGAACTTATTATCAAAAACTCAATTTTATATCGGTTG
TAACAATTCGTCGTACTCAATGAGAACCATGAAATAGGACCTTTGTTTGATGAAAAGGAG
GAAATGACTACAACGATAGTTTGGATCTCTTTTCCATCACTGCCACCAAACCTTTTTGGT
AAGGAGACAATCTTCTAATAGTTGCAACAATATCAAGACTATTACAGGCATACATGGAAA
CTCAAAACAAAACAATACCAAGTTTTTCAAGGGTAAAGATAGAGGTGAATCTTTTAGGGG
AATGACCCAAAAGAAACAATATTAACATGAGGAAAAAGAACACTGAAGTTATGAAAAAAT
GGGTGACCATTCAATATAATTATATTCCAAAGTATTGTATAACTTGCAAGCTTCATGGGC
GTAATGAGAAGGAGTGCTATCTTATATATTATGAACTTTTCACACAAATGGAACAGACGG
AGGAGGGAGAAAAGGTGCAAGTTAATAAGGAAGACAAGGGCGTTAAAGTAAATCAACAAG
CAAAGAAAGGGACGAAGTGAAAAAACCAAGATCATTTTTATAAAGGTAAAGAGGAAAATA
AAAAGATAGCTAAAGAAAATGTTTTTACTGAGTAGGGAAGAAGGAATGGGTACAGAAGGT
GGTATAATTATGAAAAAATATAACCAGAACAAGTCTGGAATAAAAGAGTACAAGAAGCGA
AAAAAGCAGAAGTGAATACAGTGAACAAATTTGAGGATTTAGAAGATACATTACCTGGAC
AAGAGGATAACAATGAGGTAGAAAGAATGGAAAATAAGGATACAGACATTTAGAAGAGGT
TTGAAGACAAGGTACAAGGGAAAGAATGAGATACTGTTAACTTCAGTTGCCATAGGGAGA
ACAAAAAAAAGTTCTGACCGAAGTATAATATTTTATAGCCCGGAAACCTCTATTGTGAAA
GATACAAGTATCATTTCTAGTGTGGAAGTAACACAATAGGAGAATGAGAGAAACAATGGA
GGGTAATGGAGAAAACACTAACAAAGGAACAACAAGTTGTGTTAAATTTGAAACAAGCAA
AAAATTGTCGTAATTAAAAGATAGACAAGCATAGCCCAGGAGAGTTACATGATAAACATG
ATACAGAGGAGGAAGAGATCCTAGAATCTCACATACAGGAGACATGAAGAGAAGGAGACT
TATTCCCTCAACAAATAAAAAAATTGAATGGAAAATATTGGGAAAGAAGGAACAACATTC
GAGATATGACTTATGTAACCACAAAACCCAAAATGATCAGCCCCTCCATATTCATGTATG
ATTAGTAAAGTGCTATTTTGGACCATTAGGTTGGTAAAATCTCAAAATTCTTTTGAAAGG
CTACTAGACCTAAATAGGAAAATCATTAGGCATACATTGCTCTTTTCCATCCTTCTAAAG
TCCATCGACTAGAAAAGCAACAATCCAAAGTTAATTTGTCTTTCAAATTTTGGTTGTTTT
GGGATGAGAAGTGGGAAGGGAAAGTTGTTTTGACACACTGCATGAAATTACAATCACTCT
AAAGCATGGAGACAACAATGGTGTTGTCAAAATTACAACAATTATGCTAGATGTAGTGCC
TTGGAGATATTTAAATTGTGTAAAGACCTTGTGGTGGTTTTTAACAATACACATTTTACA
TGGATGGGAAGGGGAGATTTCAATACCATAATAGATGAGTCAGAAAAGATGGGAGGTCTG
CCAGTCTCGCAACTTGAAGTTGAAGATTTTGTTCAATGTATAAGTTCTTGGATATTGAAT
GTAATAAAATTCTCAAGAAACAAGTATACCTTATGGAATGGCATAACAGAGGCTGGCTAT
ATTTTTGAATGGTTGGATAGAGTCTTTGGGAGCAATGACCTCACGAAGGAGTTCTAAAAC
ACTGAAGTGAAACATTTGATTGGGGAGGGCTTAGACCATGACCCATTGCATAATACTTGA
AATGCATCACAAAAGCAGATTTACAAGCCTTTTTGGCTTAACTTCTAGGAAAAACAACAC
AACTTTCAACGTACAGCGGAAGATATTTGGAATATGGAGGAAATATGCTCCCCTTTTACA
GTAGTTTAAACAAAATTGGAAAGGGTGAAATCAGCTTTGGTCCAATGGAGCAAAAATACT
TTTGGACATATTTTTCAATAGGTGGAAAAAATAGAAGATGTACCATTTGTGATGAAAACT
TAATTTACATGGTTTAAATTGTATTTTATCCCCCATTTGAGTTTGAAATAGAGTAATTTG
AAGTCCTACGTGTTAGGAATTAT
>S_lycopersicum_scaffolds.fa_SL2.40sc04057_7835794_7838398_ch12-sc03-2_Product
GACCTGTCCCTTCCATACCTAAGTCATAAATTACCAAATGTACCAGTGGAAGTTGCAAAT
AAGGAAATTGGGTCCTAGAACTCAAAACGACCTACTGGGCCGTCACATATCATTGCCTTG
TAAAAAATTGAAAATGATCACTTCATGGTAGAACTTCGATCCGAGTTCCTCAAATTGTTC
TTTCACACTGACATTTTTATTTTCCTGGATAACTGTCACGAGGTTGGAGGTTTTTGTTCC
TTTTTCAATTTCTATGCATCCAATATTAACCTCCTATTTTTACAGGCTGAACATCCCACT
TTGTCAAATATTAATTTGGATATACCAGTTGGTGAGCTAGTTGCTATTGTGGGTGGGACT
GGAGAAGGAAAGACATCTCTGATTTCAGCAATTCTTGGGGAGTTTCCTCCTTTAGGCAAT
GCAAGTGTCACTATCAGAGGTTCCATTGCATATGTTCCTCAAGTTTCCTGGATCTTCAAT
GCCACTGTGAGCTTCAATTTATCCCTATTCCTTGTTATGCCTGTAGCACAAGTATGTTTA
CATGAGCATACTATTTCGGGGAGTCATTACAATATGTTGTAGATATTCTTAAAATGTGAT
AAATTATCTCTGGGTATTTATATGAAACAATGCAATTACCTTTACCTTACTGTTTTTAGG
TACGTGAAAATATATTATTTGGTTCCAACTTTGAACCAACAAGATATTGGAAGGCAATAA
ACGTCACTGCATTGGACCATGATCTTGAGTTACTTCCAGTTAAGTACATTTGATGGTAGT
GTATTTGTGTCAATATATCTTTATGATGTATGGAATTTTCTATTTACTAGTTAGTCTAAA
TGAAACTGCTATGTTCACACATATAAAATATTCAGGGTGGGGACCTTACAGAAATCGGCG
AAAGAGGAGTGAATATTAGCGGAGGACAAAGGCAAAGAGTGTCGATGGCTAGAGCTGTCT
ACAAAAATTCCGATATCTATATATTTGATGATCCCTTAAGTGCTCTTGATGCACATGTTT
CCCATCAGGTAATTATCTTGTATGAATGCCTGGACAACACCATTTCAGTAAGGGAATGGG
ATATCAACATTACCTGAGAAGACCTTCCTTCTATATCCAATCTTCATATCCACCACCTGT
AGATTTTTCCAAATTGACTAACCTCTTTCGTGTATATGTACAAGACTAATTTGCAGTAAT
TGGTCATAATTCACTGATTGCAATTGTTCCATCGTTCTTGTTGCAGTTTTTAAGCATATG
CTAAATTCAATTTGGATCTAACTTGCAGTGCAATGGGATTTTTCAGGTTTTTAAAAACTG
TATAAAGGAAGAATTGCAAGGAAAGACTAGGGTGCTTGTGACAAATCAGCTGCATTTTCT
ACCTCAGGTGGATCGGATCATTTTGGTTTCTGAAGGAATGGTGAAAGAGGATGGGACCTT
CGAGAAGCTTTTGGAACATGGCACACTTTTTCCAAAGCTAATGGAAAATGCTGGGAAAAT
GGAAAGTTATGGTGTTGAAACTGAATATGACCCAAACTTTGACAGTGAGAGTTCACAGTC
TTCAAGCACAAGGCAAGAGCACCAACAAGATGTAACCTCTGTAACCAAAAGGAAGGCTGG
TAAATCTGTTCTTATCAGGCAGGAAGAGCGGGAAACTGGTATTATCAACTGGAGTGTTTT
GATGAGGTAACAAGTTAATGTATATGCTTTGAGACATTTATCCTTGGAAATTTTAATCAA