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Aflitos, Saulo Alves
tools
Commits
9094f064
Commit
9094f064
authored
Nov 06, 2012
by
sauloal
Browse files
2012-11-06_12_00_01_01_00 :: 23 :: D => 2
parent
19fe6820
Changes
24
Hide whitespace changes
Inline
Side-by-side
mapping/blast/1_primers.fasta
deleted
100644 → 0
View file @
19fe6820
>JBPP0904F_primer
ACGCTCGCCTTCTTCATTACC
>JBPP0904R_primer
GTGTCCCGAAGGCTAAGCAC
>JBPPH036P06F_primer
CCCTTGTTAGTGGGTATGTTGGC
>JBPPH036P06R_primer
AGTGGCTTGTTGGGTGGTTAG
>JBSC0201F_primer
CCCTTGTTAGTGGGTATGTTGGC
>JBSC0201R_primer
AGTGGCTTGTTGGGTGGTTAG
mapping/blast/2_sequences.fasta
deleted
100644 → 0
View file @
19fe6820
>JBPP0904F
AGCACTTTTCTACACAATTGTGGTTTCATGCGCCCCGAATACTTTAACAGCGATAAAAAAGTGCATTGTTGATGCNCGCT
GATTTNTGTAAATTTGAAAACTATAGAAAGAACTGAGTTACCTGAATGAAATCTAGACGATTTGATGTACTGTCCATCTC
CGTGTCCAACTCACTTAAGATCTTCTCCTGCAAGAACATATATTGATTTTAACTACATTTTGCTTCGGAGGAGTTTAAGC
AGAGCTGCAATTTGTTCAGTGACAAATTCAAGGAACTGGTTAAGCAGGTGGTCGCACTCACGTGTGCAAGAAGTTCATCG
TGTATGGTGAGCCCAACATCTCCAATTCTGACTACGCTGGCACTAAGCTCGTCTAGTTCTTCATCCTGTTGCCTGCACAG
ACGATCAAGAAAATACGCTTTCTGAAAGTTATACTTAAAAGCTATAAAAATGACATAGTACCATATCAAATAGATTCAAG
ATTATGCTACATCCTCTAAATTCTACGTTAATTGAAGTCTTCTCGACATAATTTAAGTGCTGGCAAAACTATACTGCTAA
TACCTTTAATAACAGGTACTAAAGGGTATTCAATACAGCATACTATTCCATGATAAATGAAGTTAAGTAGACAAACTCAG
AAAGCTAAAAAGACATGGCAGAATGGTTATGACTATGACATAAAGATCTTAGAGAGGCTGATGATACATATTATCCTCCC
CTTATAAATAAAATCAAAGGCTAGGATTCCATAGTAAAGATTGAGAAAACATTAAGATGCCTCAGAAAGATAAATGGATA
GGTGCATGCAAGATTTACAGTGAGATCGGAATAAAAATCAATTGGTAATAAAAATGACAAACAAGGATAGATGCAAAGAA
ATGGAGGGNAATATTACCCTCATAAGAAGTAATNGTCTATCTGNATNCTGATGATATGAAGTCANCATTNATCNCGGGCA
TNGTATGCATTGGGATCNCNCCTTNCCNGTNCANAANCNTGGGCAATCTCAACAGGNNCTCGCCGGNATCCCACNNCAGA
ATTANANGGTACNTGGNCCCCNTTGGACTGGTNNNCCNCC
>JBPP0904R
CANTATGNATTAAAGTTTTGTGAATCATGCTTTCTTNCCATACGAATTCTGTACAAATGATTTGAATTTCTAAAAAAGCN
ATAAACTAATGTTGAGTTGAATGCATCAAGGAGCTCATTAGATTGCCGATTTGGCTATATAAATGCCCAAATATATACTG
CACATCGGCCTTTTAATGGATATCAGCACAGGTTTGTGGTCTATTTCAAGCTACTCTCACCCTGGTCTATTCCCATGAAA
TCATGTGCCATGTTCCTCACTGTCATTCACATTTTTTTTCTTGTTTCGTGAAATGAAAGACACAAACCTATGTCTTTCCA
TTTATCAAAAGAGGATCAGTTTAGTTTGAATTTTGTGAGTTCAATTGGATTGGGATGGAATTTATCTACGAAAAGCTTAC
TTTCCAAAATTTTGACAAATCTCATTTTGTATGGGGATTTCCACAGGACCCTTTTCCTTTGTTAAGAGTTATATTTTGTT
CTCATCTCATGGATAAATGTTTCTTATCTAAAAAGAGAACTTTGAGTTCTTTGCTTTACCTGAAAAACCAACAATTCATA
TTCGAAAGGTTTAGAATGGCAATCTGGAACTCTTGTAGCAATAACAACTACCATTACAAACCTGAAGGGTAACATGGACT
TGTTAAGGTTTGATTCAGTTGGGTTTCTTTGCGTTTTTTCTCATTTCTCAGACGAGTTAGTTGTAGAAGACAGGTTGTTC
ACCTTATTTACTATAGGACTGTTAGCATTTGCACTTCTCCATTAGCTTTTAAGTATTTTAGGTTCAGCCCAGACCAAAAG
TGTTCACTTTGAACAAACATAAAGGCACATTTATGCTTAGCGTTATATATCAACAAGCAAAATACTCCTAACTCTTTTCT
GACGGGAGTCCGGGGACAATTTTGGAGTTTTNGCACTNGATATTNGTAATGCCTTCCTACTGGAGATAATATCATTGGGN
CATGTATAGGAGTATNATNNNNCTGGGAATCACCCTTCNGGGTAATNNNCATATTNNCTCGGNAAAANCCCCTTNTNGGC
TAAAGN
>JBPPH036P06F
CAACCTATCCTTTCTGGCTTGGTGCTTTCTCCTGCCCCCAGTCTATTGTGTGCTTTTATTGCAGTTGCAAGATATGCANC
CTGCCACTCCNATGCCACCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACTCC
CCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTANNCGTTATGTTATGGAATTCGAACGC
AGAATCAAATACATAGGGTGGTTTGAAAGGNTTATATGGAGAGTCATGACATTGTTNNCAGTCTGCCCAGATNAGCCTTT
GCCANCAGAAGATTCCTNCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCGGGCACATACATGGCNCTGGA
AATATTNANTTAGGGGACGTGGNNGGNGGTGGANGANAAGGGCNCGTNNACCNGGNCGANGANCNGAAGAANANCAACAA
AGNNCAANTAACTCANGACCAGACCGCCTCTTCAAAAATGAAAATGTCGGACNGGTATCAAGCTGNNGNAAAATANTGCT
ANACCCACCNNCCATGTGGGTGAACAGGNCCGCAACNAGCAAGCACNGTGNGGCANTGGAAATACNGCGGNCGGATAAGC
CCANCANCANGNAAGAACCTACTGTATCTGGGTAACGGAAGCTATAAANCTNGCCAACNGAAAAAGATGGTAAGCCNCCA
GCCCCNNAAANNACAAAGANACCCTCTACCACACAAAANNCCCGCGNTAACAGTGNANNCCCCNTTTAGGCGANNAANNA
ACGTTNNNCGGNGGNNCCTNCCCAGNGNNTTTANGAANCNNCACCCAGGGNTAAAACGAAANAANNCNCCCCAAAANANG
NGGGGGCANNNCCACNNGGGTCCCAGGGNAATCNGNGGNTCNAANANACNNGGCCCCCCATNGNNNCCCCCCCGGNANAA
AGAAAAACNAANCCCCCCNNCCCNNANANNNCCCCNCAANTATGGCAANGCNNAANGGCAACCCCNGAGNGGGNGGNNAA
TNAAANGNTTNNNCCNCGGNNNAAAGANAAAAAAAANAACNGGNNGGGCNNGCCCATNCNGGGCACNTNCCGNNNNGCGC
CAACGNGACACCANATTTTNGCCAAAGGNGCACCTCNCCNCNAAANNGCGGNCCTNAATNACAACCCGCGCGCGNNNNGG
GGNTCAGCGGCACAACAANAAAAANATTNTCNNNCNNGGGGGGGACAAACNCCCCCGTTGGTGTGTTATAAA
>JBPPH036P06R
NANTGACGACTAGGAACNCCAAAGGTTGCTATATTGCCCCTCAAATCTTTATATCCATGAATTTACAACAGAAAAATAAN
CCACTAAGTANTCTTCAAAATGGTCAGACTAGTTATACTTTCCTTTCTTTTGCATACATATAAAAGAAAATATGTGTAGC
AGAAGTGAGGCCCCAATGAAGAATTCATTGACAAGGGGTTTTATCGTGTATGAACCGTTTTGTTTTGTTCCTCAATATGA
TCTCATACTGACGGGAAATACTTGTTGAGATTGAACGGAAGAGAGTAGAATTCCTCACTTCTTGTGTCACTCTTGAAGGA
CCGGAACTTGTTCCACCACGGCTTGCCTCTGTCTTTCTTTGTCGAACTCTCCTTTTTGTGCATTGTATTGTCCAGGAAAT
AAGCCAATATGCCAGCAACAAAAGCTTCTGATGAGAAGGGCACGTTCACCATGTCGTTGAACTGAAGAATAACAACAAAG
CACAAGTAACTCTTTTCAGCCACCTCTCAAAAATGAAAATGTTAGACATGTATTAAGCTAGTGTTAATTATTGCTATACC
CATCGTCCATGTGTGTGAACAGGTCCGTAACCAGCAATCACAGTGTATTCATTGAAGTACTGCGGTACTGATAAACCCAA
AAAGATTGAAAAACCTAATATAAACTTGTTACGGAAACTATTAAGATTGCAGAACTGAAGAAAGCTTAAGCCTCCAACCC
CTACAAACAAAGAGAACAAGTAATCACTAACTCCTCATAACGTGANCCACATATTGGTAATGATCATCACACAGGGGNTN
CCCCTNGGNNTATTTACGTACCCNACATAAGCNAAGAATAGGCNATAGAGAGCGNCCTACNAANGGGGNGCTGGGAANTC
NAAGCCAAAGANGGCNCCCAAANTTTTNCCTGGAAAAANAAAANAAAAGNNGCCTNCNAGNANAAANTAACCNTGCCNAN
AAAAANGGAGCCTGGGGGGGGGGGNCGANAANTNTNCNGCCGAAAAAACCCAANAAAAAANNGTGNCCCCCCCCAAAATA
ANCTTGGGNCNGGNNNAAAATTNCCCCCNGNANNNGGNNNNNGNAAAANNCCTNNNCCCCCCCNCCGGGNTTTTNTGGNA
NCAAAACNCNNTNCNNGNCNGGGCCAANNCCCNNGGGTTNNNGGGGNNAAAAAAAAACCNNN
>JBSC0201F
NCAACTAANCTTCTGGCTTGGTGCTTCTCCTGCCCCAGTCTATTNGTTGCTTTTATTGCAGTTGCAAGATATGCAACGTG
CCACTCCNATGCCACCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACTCCCCT
CCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTTGTTATTTTATTGAATTTGAACGCAGA
ATCAAATACATAGGGTGGTTTGAAAGGTTTATATGGAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCC
ACCAGAAGATTTCTTCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCTGTTTTT
ATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAGANAANNAATNNGGAATNCTCAGNNNG
ATNCANNAGAAGAATGATNGTNCTNGCACNNCCTCATNCCGGNCTGNNACCAANATGNTCCANNATNATNATCATATGAN
GAANCNNNNNGNTGNATNNANNNNCCAAANNNNNGNNATGTNANGGAANNGGNATNNNANNGNNNNGNNNGNNCGGNNNN
GNGAANGGATNNNNNGNNTNNGNGNNNNNNNNNGNNANANNNNNNNNNNNNNNNNANGANGGNNNANANNNNNNNNNNNN
NANANNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNNNGNNNNNNNNNNNNNNNNANNNNNNGNNNNNNGNNNANNNN
NNNNNANNNNNNNNNNNGNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNN
NNNNNNNNNNGNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNANNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>JBSC0201R
ANTGACGACTAGGAANCCAAAGTTGCTATATTGCCCCTCAAATCTTCATATCCATGAATTTACAACAGAAAAATAATCTA
CTAAGTANCTTCAAAATGGTCAGACTAGTTATACTTTCCTTTCTTTTGCATACATATAAAAGAAAATATGTGTAGCAGAA
GTGAGGCCCCAATGAAGAATTCATTGACAAGGGGTTTTATCGTGTATGAACCGTTTTGTTTTGTTCCTCAATATGATCTC
ATACTGACGGGAAATACTTGTTGAGATTGAACGGAAGAGAGTAGAATTCCTCACTTCTTGTGTCACTCTTGAAGGACCGG
AACTTGTTCCACCACGGCTTGCCTCTGTCTTTCTTTGTCGAACTCTCCTTTTTGTGCATTGTATTGTCCAGGAAATAAGC
CAATATGCCAGCAACAAAAGCTTCTGATGAGAAGGGCACGTTCACCATGTCGTTGAACTGAAGAATAACAACAAAGCACA
AGTAACTCTTTTCAGCCACCTCTCAAAAATGAAAATGTTAGACATGTATTAAGCTAGTGTTAATTATTGCTATACCCATC
GTCCATGTGTGTGAACAGGTCCGTAACCAGCAATCACAGTGTATTCATTGAAGTACTGCGGTACTGATAAACCCAAAAAG
ATTGAAAAACCTAATATAAACTTGTTACGGAAACTATTAAGATTGCAGAACTGAAGAAAGCTTAAGCCTCCAACCCCTAC
AAACAAAGAGAACAAGTAANCACTAACTCCTCATAACGTGAACCACATATNGGNAATGATCATCACNCAGGGGCTNCCCC
TNGTNTATNNACGTNCCCTACCNTANNCNANNGAATAGGCNANNNNAGAGGCGCCCTACCNNNGGGGTGGNNGGGNNTCN
NANNNNNANNACGGGNNCCCNANNNNNNCCTGGNAANANNAANNAAANGGGCNNTNNNNNATNANNNAACCNNGNCNNNN
NNANNNNNNNNGGGGNGNGGGGGGNNANNNNNNNNNNNNGNNNNNNNNNNNNAAANNNNNGNNNCNNNCNNNNNNNNNNN
NNNGNNNCNGGGGGNNNNNNCCCCNNNGGNNNNNGGNNNNNNNNNNNNNCNNNNNNCCCCNNNGCNNGGNNNNNNNNGNN
NNCNNNNNNNCNNNNNNNNNNNGNNCNNNNNNNNNNNGNNN
mapping/blast/JBPP0904_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_chromosomes.fa_SL2.40ch12_62702453_62706035_JBPP0904_Product
ACGCTCGCCTTCTTCATTACCATGCCAATCTTTTTCTACAACAAATTGTGGTTTCCATGC
GATAAGAATACAATAACAGCGATAAAAAAGTGCATTGTTGATGCGGCTGATTTAGTAAAT
TTGAAAACTATAGAAAGAACTGAGTTACCTGAATGAAATCTAGACGATTTGATGTACTGT
CCATCTCCGTGTCCAACTCACTTAAGATCTTCTCCTGCAAGAACATATATTGATTTTAAC
TACATTTTGCTTCGGAGGAGTTTAAGCAGAGCTGCAATTTGTTCAGTGACAAATTCAAGG
AACTGGTTAAGCAGGTGGTCGCACTCACGTGTGCAAGAAGTTCATCGTGTATGGTGAGCC
CAACATCTCCAATTCTGACTACGCTGGCACTAAGCTCGTCTAGTTCTTCATCCTGTTGCC
TGCACAGACGATCAAGAAAATACGCTTTCTGAAAGTTATACTTAAAAGCTATAAAAATGA
CATAGTACCATATCAAATAGATTCAAGATTATGCTACATCCTCTAAATTCTACGTTAATT
GAAGTCTTCTCGACATAATTTAAGTGCTGGCAAAACTATACTGCTAATACCTTTAATAAC
AGGTACTAAAGGGTATTCAATACAGCATACTATTCCATGATAAATGAAGTTAAGTAGACA
AACTCAGAAAGCTAAAAAGACATGGCAGAATGGTTATGACTATGACATAAAGATCTTAGA
GAGGCTGATGATACATATTATCCTCCCCTTATAAATAAAATCAAAGGCTAGGATTCCATA
GTAAAGATTGAGAAAACATTAAGATGCCTCAGAAAGATAAATGGATAGGTGCATGCAAGA
TTTACAGTGAGATCGGAATAAAAATCAATTGGTAATAAAAATGACAAACAAGGATAGATG
CAAAGAAATGGAGGGAATATTACCTCATAAGAAGTAATTGTCTATCTGATTCTGATGATA
TGAAGTCATCATTATCTCGGGCATTGTATGCATTGGATCTCTCTTTCTGTTCAGAATCTG
GCAATCTCAACAGTTCTCGCCGCATCCCACTCAGATTAGATGTACTTGTCCCATTTGACT
GTTTTCCAGCTACTACAGCTTTCTTCATGCTTCCCACCTGGTTAAAGGCAATTTGAAATC
GTTTATTTATTTTCAGGAACCAAGAAACAAAAGAATAGATATTTGGCATCAACAGAATCA
GTTATACTTGAGCACGGGCATTGCTGGTCCATCTTCTTCTCTTATCAAGCTCAATATCAT
TAATACCATACCAAGAAGGATCTCTTGCTGCAACATCAATTGTTTTGTCCAATTCATCCA
CCTTCTCATCAAGAAAACAGGAATTCAGCATTGATAAGGATATGAAGCAAGTCATAGCAG
CAGTAGATCAATATCAAATCACACTGACAGAAGAACAACTCTGGTTATGTTGCTATTGTT
CACTGAAAGAAGAACATCTTTCCCTAAGTACTAAAGTCGACAGATTGGACAGCACAAATT
CATAGACTGAACTTAAGACAGGTGCAACACATCAAACATGCAATTGTCTCTGGCTATTCA
AAATTGTCGTAATTCATTCACGTAAAGTACAGGCAATCAGGAAGAAATATAATGAGAATT
TAACAGACCAAACAGTGATAAGTATCAATTAACCAAGTTTCAAGGAGCTACGTTTCCGCA
CATACCTGCCACTCAATGCTCTCAGATGAAGCAAGAAGTTCTTTGGTAAGATGTACTTGC
TCACTACTTCCGGCAGAAGTTTGCTCCCATTGATGAAACGTGGACAAGAGCTTGTCAATC
TAACCAAGCAGGAATTTCAAGAGTTAGATTAAGTAGTCAACAAACTTGATCACATATGAG
ATCCAACAGATTCTACCAGCAAGGAGAGTCTTAGCTTATTTTTTCTTAATAGTAAAAGAG
ATGAAATTTCTTAGTTTGTTCAGCTTGTTTTTTTATTTTTTCTATGAAAATAGACAATAG
CCACAAGAAAATCATAGCTTTCTTACCTGTTAGCTGTTACTGGAGTACTTGATTTTTAAA
CCTTAGTCTCGAAGAATTATACTTTATCTCATAGAAACATTACTCACCCCCTTCCCAGAA
TGTCGAGAGAGATGGAGATAGATACATGACAGGAAACACCACCAACCCTTCATGAATCTA
TCTCCCATGCAAGAATAAGAACAACACACTAATAAAAAAAAACAAATCTCAGACGAATAA
GATTTACTTCACTTCAAGATTATTAGAACATAACTAGATCGAAGTAGATGAACTTACAGA
TTCTTGAATTTCCTCCTTGACAATATAGAAAGGATCTTGAGCTGAAGACATCTTCAACAC
CAACTGTAGAACATTTAAGTGGACACATCAGATAATTAAATAACATATATAATACATATA
AAAAGCATCAGGAGAAAGATGATCGAGAACTATATCTTATACCCAGACATTGCAAAGTAG
TACATCTCAAAATGCCTTTTCCGTAAAGTGTATTATGACAGAGAGATACAGTGGCACTTT
AGCAAGAAGGGCTTTTCCGAGAAAATATGAAAATTACCAGAAGGATGAATTCCAAGAAAA
ATAATACTCCTATACATGACCAAATGATAATTATCTCCAGTAGGAAGGCATTACAAATAT
CAAGTGCAAAAACTCAAAATTGTCCCCGGACTCCCGTCAGAAAAGAGTTAGGAGTATTTT
GCTTGTTGATATATAACGCTAAGCATAAATGTGCCTTTATGTTTGTTCAAAGTGAACACT
TTTGGTCTGGGCTGAACCTAAAATACTTAAAAGCTAATGGAGAAGTGCAAATGCTAACAG
TCCTATAGTAAATAAGGTGAACAACCTGTCTTCTACAACTAACTCGTCTGAGAAATGAGA
AAAAACGCAAAGAAACCCAACTGAATCAAACCTTAACAAGTCCATGTTACCCTTCAGGTT
TGTAATGGTAGTTGTTATTGCTACAAGAGTTCCAGATTGCCATTCTAAACCTTTCGAATA
TGAATTGTTGGTTTTTCAGGTAAAGCAAAGAACTCAAAGTTCTCTTTTTAGATAAGAAAC
ATTTATCCATGAGATGAGAACAAAATATAACTCTTAACAAAGGAAAAGGGTCCTGTGGAA
ATCCCCATACAAAATGAGATTTGTCAAAATTTTGGAAAGTAAGCTTTTCGTAGATAAATT
CCATCCCAATCCAATTGAACTCACAAAATTCAAACTAAACTGATCCTCTTTTGATAAATG
GAAAGACATAGGTTTGTGTCTTTCATTTCACGAAACAAGAAAAAAAATGTGAATGACAGT
GAGGAACATGGCACATGATTTCATGGGAATAGACCAGGGTGAGAGTAGCTTGAAATAGAC
CACAAACCTGTGCTGATATCCATTAAAAGGCCGATGTGCAGTATATATTTGGGCATTTAT
ATAGCCAAATCGGCAATCTAATGAGCTCCTTGATGCATTCAACTCAACATTAGTTTATTG
CTTTTTTAGAAATTCAAATCATTTGTACATGGTTCGTATCCAAGAAAGCATGATTCACAA
AACTTTTAATTGACATTACTGAAGTGCTTAGCCTTCGGGACAC
mapping/blast/JBSC0201_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_chromosomes.fa_SL2.40ch12_16714760_16716664_JBSC0201_Product
CCCTTGTTAGTGGGTATGTTGGCCAAATCTAATCTCTTTCTTGCTTGTGCTTTCTCCTGT
TTCAGTCTACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCATGCCAC
CATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAACT
CCCCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTTG
TTATTTTATTGAATTTGAACGCAGAATCAAATACATAGGGTGGTTTGAAAGGTTTATATG
GAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCCACCAGAAGATTTCTT
CAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCTG
TTTTTATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAGA
CAATTAATTTGGAATTCTCAGTTTGATTCACGAGAAGAATGATTGTTCTTGCACTTCCTC
ATTCCGGTCTGTTACCAACATGCTCCATTATTATCATCATATGACGAACCTTTTTGCTGT
ATTTACTTTCCAAATTCTTGTTATGTCAGGGAATTGGCATTTTACTGTCGGGTTTGTTCG
GCACCGGGAATGGATCTTCTGTATCTGTGTAAGTACAGGCGAAATCTTCTTCAGCACAAT
AGGATGGTAGAAATTAGTTATCTAAGACGAATTAACTCTCTTCATACACATGCAGTGAAA
ATGCTGGTCTTTTAGCACTAACACGTGTTGGCAGCCGAAGAGTTGTTCAGATATCAGCAG
GGTTTATGATTTTCTTTTCAATTCTTGGTAATTTTCCTGTCCAAGTATTTTGTTGAGTAA
ATTTTCTTGATTTTCGCTGATATTTTATCCCTCCCCAGCTCCTCTTTTGCATGTTATTTA
TCTAAATGCACTTTGTTTCTTTTCAGGAAAATTTGGTGCCGTCTTTGCTTCGATTCCAGC
ACCCATTGTAGGCGCTCTCTATTGCCTATTCTTTGCTTATGTAGGTACGTAAATATACAA
GGGAAGCCCTGTGTGATGATCATTACCAATATGTGGTTCACGTTATGAGGAGTTAGTGAT
TACTTGTTCTCTTTGTTTGTAGGGGTTGGAGGCTTAAGCTTTCTTCAGTTCTGCAATCTT
AATAGTTTCCGTAACAAGTTTATATTAGGTTTTTCAATCTTTTTGGGTTTATCAGTACCG
CAGTACTTCAATGAATACACTGTGATTGCTGGTTACGGACCTGTTCACACACATGGACGA
TGGGTATAGCAATAATTAACACTAGCTTAATACATGTCTAACATTTTCATTTTTGAGAGG
TGGCTGAAAAGAGTTACTTGTGCTTTGTTGTTATTCTTCAGTTCAACGACATGGTGAACG
TGCCCTTCTCATCAGAAGCTTTTGTTGCTGGCATATTGGCTTATTTCCTGGACAATACAA
TGCACAAAAAGGAGAGTTCGACAAAGAAAGACAGAGGCAAGCCGTGGTGGAACAAGTTCC
GGTCCTTCAAGAGTGACACAAGAAGTGAGGAATTCTACTCTCTTCCGTTCAATCTCAACA
AGTATTTCCCGTCAGTATGAGATCATATTGAGGAACAAAACAAAACGGTTCATACACGAT
AAAACCCCTTGTCAATGAATTCTTCATTGGGGCCTCACTTCTGCTACACATATTTTCTTT
TATATGTATGCAAAAGAAAGGAAAGTATAACTAGTCTGACCATTTTGAAGTTACTTAGTA
AATTATTTTTCTGTTGTAAATTCATGGATATGTGGATTTGAGTAGCAATATAGCAACTTT
GGTGTTTCCTAGTCGTTGCAAAATCTAACCACCCAACAAGCCACT
mapping/blast/blast2align.pl
deleted
100755 → 0
View file @
19fe6820
#!/usr/bin/perl -w
use
strict
;
my
$inFile
=
$ARGV
[
0
];
die
if
!
defined
$inFile
;
die
if
!
-
f
$inFile
;
my
%res
;
&readFile
(
$inFile
);
&printRes
();
sub
printRes
()
{
my
$matrix
=
&getSubMatrix
();
#$res{$lastQuery}{seq } = \@seq;
open
COV
,
"
>
$inFile
.cov
"
or
die
;
my
$totalScore
=
0
;
foreach
my
$qry
(
sort
keys
%res
)
{
my
$data
=
$res
{
$qry
};
my
$start
=
$data
->
{
start
};
my
$end
=
$data
->
{
end
};
my
$len
=
$end
-
$start
+
1
;
my
$seq
=
$data
->
{
seq
};
my
$seqLen
=
scalar
@$seq
;
print
"
query
$qry
\n
";
print
"
START
$start
END
$end
LEN
$len
SEQLEN
$seqLen
\n
";
my
$title
=
"
$qry
$start
";
my
$ref
;
my
$cov
;
for
(
my
$p
=
0
;
$p
<
$seqLen
;
$p
++
)
{
my
$nuc
=
$seq
->
[
$p
];
#print "NUC $nuc\n";
if
(
!
defined
$nuc
)
{
$ref
.=
"
-
";
$cov
.=
"
0
";
print
COV
(
$p
+
1
),
"
\t
0
\n
";
}
else
{
my
$refNuc
=
uc
(
substr
(
$nuc
,
0
,
1
));
my
$covNum
=
length
(
$nuc
)
-
1
;
my
$covLen
=
length
(
$nuc
);
$ref
.=
$refNuc
;
my
$score
=
0
;
my
$lMatrix
=
$matrix
->
{
$refNuc
};
for
(
my
$n
=
1
;
$n
<
$covLen
;
$n
++
)
{
my
$lNuc
=
uc
(
substr
(
$nuc
,
$n
,
1
));
my
$lScore
=
$lMatrix
->
{
$lNuc
};
$score
+=
$lScore
;
#print " FROM $nuc COMPARING $refNuc WITH $lNuc SCORE $lScore ( $score - $n - $covNum )\n";
#if ( $nuc eq $refNuc ) {
# $score += 1;
#}
#elsif ( $nuc eq "-" ) {
# $score += 0;
#}
#else {
# $score += -0.5;
#}
}
$cov
.=
$score
.
"
,
";
$totalScore
+=
$score
;
print
COV
(
$p
+
1
),"
\t
",
$score
,"
\n
";
}
}
print
"
$title
TOTAL SCORE
$totalScore
\n
";
if
(
0
)
{
my
@ref
=
split
(
//
,
$ref
);
my
@cov
=
split
(
/,/
,
$cov
);
#my $ref = $title;
#my $cov = " "x(length($title));
for
(
my
$q
=
0
;
$q
<
@ref
;
$q
+=
30
)
{
my
$r
=
$q
+
30
;
if
(
$r
>
@ref
)
{
$r
=
@ref
-
1
;
}
my
$rf
=
"";
my
$co
=
"";
for
(
my
$s
=
$q
;
$s
<
$r
;
$s
++
)
{
$rf
.=
sprintf
("
%4s
",
$ref
[
$s
]
);
$co
.=
sprintf
("
%4s
",
$cov
[
$s
]
);
}
print
"
$rf
\n
$co
\n
";
}
}
}
close
COV
;
}
#sub getSubMatrix {
# #http://guinevere.otago.ac.nz/aef/MLRGD/usersguide/node18.html
# # T C A G
# my @matrix =
# (
# ( -1, .6, .2, .2 ),
# ( .6, -1, .2, .2 ),
# ( .2, .2, -1, .6 ),
# ( .2, .2, .6, -1 )
# );
# # extend open
# my @gap = ( -1, -3);
#}
sub
getSubMatrix
{
#http://guinevere.otago.ac.nz/aef/MLRGD/usersguide/node18.html
# T C A G
my
%matrix
=
(
A
=>
{
A
=>
1.0
,
C
=>
-
1.0
,
G
=>
0.5
,
T
=>
-
1.0
,
'
-
'
=>
-
2.0
},
C
=>
{
A
=>
-
1.0
,
C
=>
1.0
,
G
=>
-
1.0
,
T
=>
0.5
,
'
-
'
=>
-
2.0
},
G
=>
{
A
=>
0.5
,
C
=>
-
1.0
,
G
=>
1.0
,
T
=>
-
1.0
,
'
-
'
=>
-
2.0
},
T
=>
{
A
=>
-
1.0
,
C
=>
0.5
,
G
=>
-
1.0
,
T
=>
1.0
,
'
-
'
=>
-
2.0
},
'
-
'
=>
{
A
=>
-
2.0
,
C
=>
-
2.0
,
G
=>
-
2.0
,
T
=>
-
2.0
,
'
-
'
=>
1.0
},
);
return
\
%matrix
;
}
sub
readFile
{
#Query= S_lycopersicum_chromosomes.fa_SL2.40ch12_62702453_62706035_JBPP
#0904_Product
# (3583 letters)
#Database: tomato
# 13 sequences; 781,666,411 total letters
#Searching..................................................done
# Score E
#Sequences producing significant alignments: (bits) Value
#SL2.40ch12 6747 0.0
#1_0 1 acgctcgccttcttcattaccatgccaatctttttctacaacaaattgtggtttccatgc 60
#12 62702453 acgctcgccttcttcattaccatgccaatctttttctacaacaaattgtggtttccatgc 62702512
#1_0 61 gataagaatacaataacagcgataaaaaagtgcattgttgatgcggctgatttagtaaat 120
#12 62702513 gataagaatacaataacagcgataaaaaagtgcattgttgatgcggctgatttagtaaat 62702572
my
$infile
=
shift
;
open
IN
,
"
<
$infile
"
or
die
;
my
$lastQuery
=
"";
while
(
my
$l
=
<
IN
>
)
{
chomp
$l
;
#print "L $l\n";
if
(
$l
=~
/^Query= (.+)/
)
{
$lastQuery
=
$
1
;
print
"
QUERY
$lastQuery
\n
";
while
(
my
$m
=
<
IN
>
)
{
chomp
$m
;
#print "M: $m\n";
if
(
$m
=~
/\((\d+) letters\)/
)
{
print
"
SIZE $1
\n
";
$res
{
$lastQuery
}{
size
}
=
$
1
;
last
;
}
elsif
(
$m
=~
/Length\=(\d+)$/
)
{
#Length=1089
print
"
SIZE $1
\n
";
$res
{
$lastQuery
}{
size
}
=
$
1
;
last
;
}
$lastQuery
.=
$m
;
}
#print "end query\n";
my
$hspLen
=
0
;
while
(
my
$n
=
<
IN
>
)
{
chomp
$n
;
#print "N: $n\n";
if
(
$n
=~
/^((?:\d+|Query)_\d+)\s+(\d+)(\s+)([acgt\-\s]+)\s(\d+)/i
)
{
#printf "NAME %4s START %010d END %010d SEQ '%s'\n", $1, $2, $5, $4;
my
$hspName
=
$
1
;
my
$hspStart
=
$
2
;
my
$hspSpacing
=
$
3
;
my
$hspSeq
=
$
4
;
my
$hspEnd
=
$
5
;
my
$hspTab
=
length
(
$hspStart
)
+
length
(
$hspSpacing
);
$res
{
$lastQuery
}{
start
}
=
$hspStart
if
!
exists
$res
{
$lastQuery
}{
start
}
||
$hspStart
<
$res
{
$lastQuery
}{
start
};
$res
{
$lastQuery
}{
end
}
=
$hspEnd
if
!
exists
$res
{
$lastQuery
}{
end
}
||
$hspEnd
>
$res
{
$lastQuery
}{
end
}
;
my
@seq
=
split
(
//
,
$hspSeq
);
$hspLen
+=
scalar
@seq
;
while
(
my
$o
=
<
IN
>
)
{
chomp
$o
;
if
(
$o
=~
/^(\d+)\s+(\d+)(\s+)([acgt\-\s]+)\s(\d+)/i
)
{
#printf " HIT CHR %4s START %010d END %010d SEQ '%s'\n", $1, $2, $5, $4;
my
$hitName
=
$
1
;
my
$hitStart
=
$
2
;
my
$hitSpacing
=
$
3
;
my
$hitSeq
=
$
4
;
my
$hitEnd
=
$
5
;
my
$hitLen
=
$hitEnd
-
$hitStart
;
my
$hitTab
=
length
(
$hitStart
)
+
length
(
$hitSpacing
);
my
$hitTabDiff
=
"
.
"
x
(
$hitTab
-
$hspTab
);
$hitSeq
=
$hitTabDiff
.
$hitSeq
;
#print " HSP SPACING '$hspSpacing' HSP TAB LEN $hspTab HIT SPACING '$hitSpacing' HIT TAB LEN $hitTab HIT TAB DIFF '$hitTabDiff'\n";
my
@hitSeq
=
split
(
//
,
$hitSeq
);
for
(
my
$i
=
0
;
$i
<
@hitSeq
;
$i
++
)
{
my
$hitChar
=
$hitSeq
[
$i
];
if
(
$hitChar
=~
/[acgt-]/i
)
{
$seq
[
$i
]
.=
$hitChar
;
}
}
}
else
{
last
;
}
# if $hit
}
# while my $o
#print " PUSHING ", scalar @seq, " ($hspLen)\n";
@
{
$res
{
$lastQuery
}{
seq
}}[
$hspStart
-
1
..
$hspEnd
-
1
]
=
@seq
;
}
# if 1_0 (reference)
last
if
$n
=~
/Posted date\:/
;
}
# while my $n
}
# if qry
}
# while my $l (qry)
close
IN
;
}
mapping/blast/ch12-sc02-1_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_622710_624594_ch12-sc02-1_Product
TCCCTTGTTAGTGGGTATGTTGGCCAAATCTAATCTCTTTCTTGCTTGTGCTTTCTCCTG
TTTCAGTCTACTGGTGCTTTTATTGCAGTTGCAAGATATGCAAGTGCCACTCCCATGCCA
CCATCCATACTCAGCCGTGGCGTAGGTTGGCAGGTAAACAGATGCTGCCCCCCTGTAAAC
TCCCCTCCCTAGCCCAACTTTCTAATACAATGACTTGAAAGGGAAAACGCAAACTTTTTT
GTTATTTTATTGAATTTGAACGCAGAATCAAATACATAGGGTGGTTTGAAAGGTTTATAT
GGAGAGTCATGACATTGTTTTCAGTCTTCCCAGATTAGCCTTTTCCACCAGAAGATTTCT
TCAGCTCATACCCCAAAAGTTCTTCAGCTAGTACCCCAAGTCTGTCACATACATGCCTCT
GTTTTTATTTATTTAGGGGAGGTGGGTGGGGGTGGGGTGTATATGGGCATATATGGAAAG
ACAATTAATTTGGAATTCTCAGTTTGATTCACGAGAAGAATGATTGTTCTTGCACTTCCT
CATTCCGGTCTGTTACCAACATGCTCCATTATTATCATCATATGACGAACCTTTTTGCTG
TATTTACTTTCCAAATTCTTGTTATGTCAGGGAATTGGCATTTTACTGTCGGGTTTGTTC
GGCACCGGGAATGGATCTTCTGTATCTGTGTAAGTACAGGCGAAATCTTCTTCAGCACAA
TAGGATGGTAGAAATTAGTTATCTAAGACGAATTAACTCTCTTCATACACATGCAGTGAA
AATGCTGGTCTTTTAGCACTAACACGTGTTGGCAGCCGAAGAGTTGTTCAGATATCAGCA
GGGTTTATGATTTTCTTTTCAATTCTTGGTAATTTTCCTGTCCAAGTATTTTGTTGAGTA
AATTTTCTTGATTTTCGCTGATATTTTATCCCTCCCCAGCTCCTCTTTTGCATGTTATTT
ATCTAAATGCACTTTGTTTCTTTTCAGGAAAATTTGGTGCCGTCTTTGCTTCGATTCCAG
CACCCATTGTAGGCGCTCTCTATTGCCTATTCTTTGCTTATGTAGGTACGTAAATATACA
AGGGAAGCCCTGTGTGATGATCATTACCAATATGTGGTTCACGTTATGAGGAGTTAGTGA
TTACTTGTTCTCTTTGTTTGTAGGGGTTGGAGGCTTAAGCTTTCTTCAGTTCTGCAATCT
TAATAGTTTCCGTAACAAGTTTATATTAGGTTTTTCAATCTTTTTGGGTTTATCAGTACC
GCAGTACTTCAATGAATACACTGTGATTGCTGGTTACGGACCTGTTCACACACATGGACG
ATGGGTATAGCAATAATTAACACTAGCTTAATACATGTCTAACATTTTCATTTTTGAGAG
GTGGCTGAAAAGAGTTACTTGTGCTTTGTTGTTATTCTTCAGTTCAACGACATGGTGAAC
GTGCCCTTCTCATCAGAAGCTTTTGTTGCTGGCATATTGGCTTATTTCCTGGACAATACA
ATGCACAAAAAGGAGAGTTCGACAAAGAAAGACAGAGGCAAGCCGTGGTGGAACAAGTTC
CGGTCCTTCAAGAGTGACACAAGAAGTGAGGAATTCTACTCTCTTCCGTTCAATCTCAAC
AAGTATTTCCCGTCAGTATGAGATCATATTGAGGAACAAAACAAAACGGTTCATACACGA
TAAAACCCCTTGTCAATGAATTCTTCATTGGGGCCTCACTTCTGCTACACATATTTTCTT
TTATATGTATGCAAAAGAAAGGAAAGTATAACTAGTCTGACCATTTTGAAGTTACTTAGT
AAATTATTTTTCTGTTGTAAATTCATGGATATGTGGATTTGAGTAGCAATATAGCAACTT
TGGTGTTTCCTAGTCGTTGCAAAAT
mapping/blast/ch12-sc02-2_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_3080728_3082538_ch12-sc02-2_Product
AAGAACTCTCTTCGGGTGGAGTAATTATACTACCATATGAAACAACAATTGAACTCTTTG
ATGGAATGGTTAAGACCAACAAGCAGATAGGAAAATATCAAAAACTTGATACATAACTGA
CTCAGCTGGATATTTTGGCCAAGAAAGTCAATAAATTGAAGGCAATGTACAAAAAGAACA
ACAAATACGTTTCCCCTCACAAGCATAGAATTTCCAATGAAATATGAGGGTAGACAGGAT
GATCAGAACATCTTACTTATTTATCCCAATGTCATGGAACACGAAAGAGTGTTAAAAAAG
ATAAAGAGAGAATTTCTTGATGATGAATTAGATGACAACCTCTTATTCCATGTTCACTGA
TCTTGTAGAGTCCCAAATGGACAAGGTGTTGTCTAGTCTCTATCCAAAGCATAGAAAAGG
GTTTACTAATGAGAATGTGGAAAACCCCAATAATGAAATCTAAGTGGAGACTTGCACCAT
GCAACAATGTTAACTAAGGAGAATAATGGGAGGCAAACAAAGTTTTATAGATTTATTTTA
TAGAAAAATCGTGTGATAATTTTGTATGTTAAACTGTAGAATTTGTTAAAAGGTACAGGT
TGGCGACCCAAATTTCTACTTGGCGACTCACCAAAGAGGTCGGTGATCCCAACTTGGACC
GTTGTTGCACTCAAGAAATTCTAAAGCTGGAGTCTATAAAACTTCGTATGCCCATGAGCA
AATCAGCGTGTTGTCAAGCAGGTCGTCAACCATTAATTTGACCGCCGTTTGGGCCCTTAC
TAACTGAAGGTCATGTAGCACTCGACGAGGTAATGTCTCACTTGGTGTGTCGCCGAATGG
GGGGATGAGAAAAATTAATGCCGCCGTCGCCGAACGGGCGAGAACTATATGGTTTTAAGG
TCCAAAAGTTTAAAAGTCAAAAACCATTCAGATTCCCTTACTTTTGGATTTCCCAAACTT
GCACCCATACTATATTTTCTATATTTTTGTGTTTCTACCACTCATTAGTAATCCATTGTG
TATTTGTAATTTGATACCATTGTGGCCTAGCATTTCAACTCATTTATTTTGCTTCTAAGG
TTGGTTTTCGAAGCCTTGAACTCATATCTAGAGATTTTATTCATTTAGATTTGTGTTGAT
ATTTGTGAAGTGTGCTAGGCCTCTCTGGCTTAATTGTTTCTATTATTGTATGCTTATTTC
AATAACTTAATTTGGTGATCTCGCCTAAAATTATTTAATGTTGATTTATGGAAATTCTCA
TGCTTATGTTTGATCAACATTATTTGGTTATGATATTTTCTTGTTGGGTCAAGTCAGGTG
ATGTCTAAGAATCCAACATTTGTGTAAATGATGCACTTAGAGAAATGATGGAGCGATTAA
CGTGATTCCTAAAGGCCAAAGTCATTAAATTGATAGATTTTGTTAAACTTGTAGAAGTCT
AAGTATCCTAGGATCATGTGTAGCGTTGCTCTAAGTCTAATTGAATGAGTTCATTGTTTT
ATTTGGTTTTTTGGGGCTGCAGGGTTGTATTTCTGAAGTTAGGGTTGAGATTAGGTATGT
TAGGTCATTTGAAGAGCTGAGCCGAGCTCGCCGAACCACTTAGTGGTTTGCCAAATCCCC
CCTAATCGTCTTTCACATCAAGCAAAGTTTGAATTTTTGTGTTATAACATTCGGCGAGAA
GCCCGAGTTCACAAATTGCACTCAGATGCTCGCCAATTGTCATTTTTATCTCCCTTTTTT
CCCCCAACCCTTAAAAATGCATTGTATATTTTGGCGGGCTTGTCTTGCTCACCGAATGTT
TTCGGCAATTT
mapping/blast/ch12-sc02-3_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_scaffolds.fa_SL2.40sc04878_4093931_4095019_ch12-sc02-3_Product
AACCCTCAATACAAACATGAAAGTCACTTATTTCTACCATATTCATAGGATATCCCCCTA
TGCTATCCTCAACATTTAAAATAGAATTGAAGTCCTCCATTATTATCCATGGAAGCATGT
TACCTGCGTTCATATCATCTAAATATTTTCACAACTCTTTCCTTTCCTCTCGTGTGTTGA
AAGCATATACGACAGTTACAATATACTCCAAATTGAGGCTTTGATTTTGTATTTTACAGG
TTATCGCCTAGGCGCAACTTGCAACCATTAGCACTTGAAAGTAATCTGGCCTCCATGTTA
TCAATACCCCACTGTTATAATTGTCGACAAGATTAGTAACATAGTCCAATCCTCCAAACG
AGCTTCTATCCACCCTGTCAATATTACTCATTTTGATCTTAGTCTCTATCAAATCCACAA
ATCCAGTACTTTCTTTACTACAAAGGAGTTTTATCTCCTTTTGTTTGTTAAGAGTGGTTA
AACCCCTATAGTTCCATCACATCATGCTATCCATTCATGCTGGGAGTCGCTGTCCCTCCC
CCATTTATAGTTGTGGCCGTTGAAGGTTGTTCTTTCACTTCTTCTGTATGTAGAACCTGA
AACGTGTTCTTACGATCCACCTCTCCCTGATGAACATGCTTCTTCTGCCTATTTGGACTT
AATGACTTAGTCATTGGAGTGATCCACCCTGCTGTCCTTCCTCCTTGTACAGTTGTATCT
GTTCCAGTTTTTTCGGCTCCATCAATGACCCTATGGTTTATCATTTCAGTTTGTCTTCCT
CTGTATTGATTGTATGTCCCTCTTTATTTTTGCTTCCCTTTGTCTTTCACTATGTTTGGT
TGTTACTCTTCTCCTTTCCTTTGATCCGGAGGTGGGTTTTTCTTCGTGCAAATCCCTTCA
TCATGTCCATACTTTTTTCAAAAATTACACAGTATGGGCTTCCAATCGTACTGCACTTTT
TGTTCAATCAGCTCTCCTCTCTTATTTTTGAAGAAAACTTTATCCGGTAGTTCTGCTTTT
ATTCCACTTCTATCAGTAGCCTGACAAAACTGTGTCCTAATTTCTTTTCTGTGTTTTGGT
CCACCATTA
mapping/blast/ch12-sc03-1_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_scaffolds.fa_SL2.40sc04057_3198454_3200936_ch12-sc03-1_Product
TAGGAAGCAAAGGTAGTTTGGGATGAGTAGGAAGTACAACTAAGGATAATACACAATGAT
TGGGAAGTTTTCAAATGGATAGCCAGACATCCAAGAGTTTAGGAAATTAATACCAAAACA
ATGGGGTTTGAAAGGGGAAGTAAATATTGGGTTATTAAGTAGCAAATATGTATTGATAAG
GGTCTCACTACCAGAAGATTATGTGAACTTATTATCAAAAACTCAATTTTATATCGGTTG
TAACAATTCGTCGTACTCAATGAGAACCATGAAATAGGACCTTTGTTTGATGAAAAGGAG
GAAATGACTACAACGATAGTTTGGATCTCTTTTCCATCACTGCCACCAAACCTTTTTGGT
AAGGAGACAATCTTCTAATAGTTGCAACAATATCAAGACTATTACAGGCATACATGGAAA
CTCAAAACAAAACAATACCAAGTTTTTCAAGGGTAAAGATAGAGGTGAATCTTTTAGGGG
AATGACCCAAAAGAAACAATATTAACATGAGGAAAAAGAACACTGAAGTTATGAAAAAAT
GGGTGACCATTCAATATAATTATATTCCAAAGTATTGTATAACTTGCAAGCTTCATGGGC
GTAATGAGAAGGAGTGCTATCTTATATATTATGAACTTTTCACACAAATGGAACAGACGG
AGGAGGGAGAAAAGGTGCAAGTTAATAAGGAAGACAAGGGCGTTAAAGTAAATCAACAAG
CAAAGAAAGGGACGAAGTGAAAAAACCAAGATCATTTTTATAAAGGTAAAGAGGAAAATA
AAAAGATAGCTAAAGAAAATGTTTTTACTGAGTAGGGAAGAAGGAATGGGTACAGAAGGT
GGTATAATTATGAAAAAATATAACCAGAACAAGTCTGGAATAAAAGAGTACAAGAAGCGA
AAAAAGCAGAAGTGAATACAGTGAACAAATTTGAGGATTTAGAAGATACATTACCTGGAC
AAGAGGATAACAATGAGGTAGAAAGAATGGAAAATAAGGATACAGACATTTAGAAGAGGT
TTGAAGACAAGGTACAAGGGAAAGAATGAGATACTGTTAACTTCAGTTGCCATAGGGAGA
ACAAAAAAAAGTTCTGACCGAAGTATAATATTTTATAGCCCGGAAACCTCTATTGTGAAA
GATACAAGTATCATTTCTAGTGTGGAAGTAACACAATAGGAGAATGAGAGAAACAATGGA
GGGTAATGGAGAAAACACTAACAAAGGAACAACAAGTTGTGTTAAATTTGAAACAAGCAA
AAAATTGTCGTAATTAAAAGATAGACAAGCATAGCCCAGGAGAGTTACATGATAAACATG
ATACAGAGGAGGAAGAGATCCTAGAATCTCACATACAGGAGACATGAAGAGAAGGAGACT
TATTCCCTCAACAAATAAAAAAATTGAATGGAAAATATTGGGAAAGAAGGAACAACATTC
GAGATATGACTTATGTAACCACAAAACCCAAAATGATCAGCCCCTCCATATTCATGTATG
ATTAGTAAAGTGCTATTTTGGACCATTAGGTTGGTAAAATCTCAAAATTCTTTTGAAAGG
CTACTAGACCTAAATAGGAAAATCATTAGGCATACATTGCTCTTTTCCATCCTTCTAAAG
TCCATCGACTAGAAAAGCAACAATCCAAAGTTAATTTGTCTTTCAAATTTTGGTTGTTTT
GGGATGAGAAGTGGGAAGGGAAAGTTGTTTTGACACACTGCATGAAATTACAATCACTCT
AAAGCATGGAGACAACAATGGTGTTGTCAAAATTACAACAATTATGCTAGATGTAGTGCC
TTGGAGATATTTAAATTGTGTAAAGACCTTGTGGTGGTTTTTAACAATACACATTTTACA
TGGATGGGAAGGGGAGATTTCAATACCATAATAGATGAGTCAGAAAAGATGGGAGGTCTG
CCAGTCTCGCAACTTGAAGTTGAAGATTTTGTTCAATGTATAAGTTCTTGGATATTGAAT
GTAATAAAATTCTCAAGAAACAAGTATACCTTATGGAATGGCATAACAGAGGCTGGCTAT
ATTTTTGAATGGTTGGATAGAGTCTTTGGGAGCAATGACCTCACGAAGGAGTTCTAAAAC
ACTGAAGTGAAACATTTGATTGGGGAGGGCTTAGACCATGACCCATTGCATAATACTTGA
AATGCATCACAAAAGCAGATTTACAAGCCTTTTTGGCTTAACTTCTAGGAAAAACAACAC
AACTTTCAACGTACAGCGGAAGATATTTGGAATATGGAGGAAATATGCTCCCCTTTTACA
GTAGTTTAAACAAAATTGGAAAGGGTGAAATCAGCTTTGGTCCAATGGAGCAAAAATACT
TTTGGACATATTTTTCAATAGGTGGAAAAAATAGAAGATGTACCATTTGTGATGAAAACT
TAATTTACATGGTTTAAATTGTATTTTATCCCCCATTTGAGTTTGAAATAGAGTAATTTG
AAGTCCTACGTGTTAGGAATTAT
mapping/blast/ch12-sc03-2_Product.fasta
deleted
100644 → 0
View file @
19fe6820
>S_lycopersicum_scaffolds.fa_SL2.40sc04057_7835794_7838398_ch12-sc03-2_Product
GACCTGTCCCTTCCATACCTAAGTCATAAATTACCAAATGTACCAGTGGAAGTTGCAAAT
AAGGAAATTGGGTCCTAGAACTCAAAACGACCTACTGGGCCGTCACATATCATTGCCTTG
TAAAAAATTGAAAATGATCACTTCATGGTAGAACTTCGATCCGAGTTCCTCAAATTGTTC
TTTCACACTGACATTTTTATTTTCCTGGATAACTGTCACGAGGTTGGAGGTTTTTGTTCC
TTTTTCAATTTCTATGCATCCAATATTAACCTCCTATTTTTACAGGCTGAACATCCCACT
TTGTCAAATATTAATTTGGATATACCAGTTGGTGAGCTAGTTGCTATTGTGGGTGGGACT
GGAGAAGGAAAGACATCTCTGATTTCAGCAATTCTTGGGGAGTTTCCTCCTTTAGGCAAT
GCAAGTGTCACTATCAGAGGTTCCATTGCATATGTTCCTCAAGTTTCCTGGATCTTCAAT
GCCACTGTGAGCTTCAATTTATCCCTATTCCTTGTTATGCCTGTAGCACAAGTATGTTTA
CATGAGCATACTATTTCGGGGAGTCATTACAATATGTTGTAGATATTCTTAAAATGTGAT
AAATTATCTCTGGGTATTTATATGAAACAATGCAATTACCTTTACCTTACTGTTTTTAGG
TACGTGAAAATATATTATTTGGTTCCAACTTTGAACCAACAAGATATTGGAAGGCAATAA
ACGTCACTGCATTGGACCATGATCTTGAGTTACTTCCAGTTAAGTACATTTGATGGTAGT
GTATTTGTGTCAATATATCTTTATGATGTATGGAATTTTCTATTTACTAGTTAGTCTAAA
TGAAACTGCTATGTTCACACATATAAAATATTCAGGGTGGGGACCTTACAGAAATCGGCG
AAAGAGGAGTGAATATTAGCGGAGGACAAAGGCAAAGAGTGTCGATGGCTAGAGCTGTCT
ACAAAAATTCCGATATCTATATATTTGATGATCCCTTAAGTGCTCTTGATGCACATGTTT
CCCATCAGGTAATTATCTTGTATGAATGCCTGGACAACACCATTTCAGTAAGGGAATGGG
ATATCAACATTACCTGAGAAGACCTTCCTTCTATATCCAATCTTCATATCCACCACCTGT
AGATTTTTCCAAATTGACTAACCTCTTTCGTGTATATGTACAAGACTAATTTGCAGTAAT
TGGTCATAATTCACTGATTGCAATTGTTCCATCGTTCTTGTTGCAGTTTTTAAGCATATG
CTAAATTCAATTTGGATCTAACTTGCAGTGCAATGGGATTTTTCAGGTTTTTAAAAACTG
TATAAAGGAAGAATTGCAAGGAAAGACTAGGGTGCTTGTGACAAATCAGCTGCATTTTCT
ACCTCAGGTGGATCGGATCATTTTGGTTTCTGAAGGAATGGTGAAAGAGGATGGGACCTT
CGAGAAGCTTTTGGAACATGGCACACTTTTTCCAAAGCTAATGGAAAATGCTGGGAAAAT
GGAAAGTTATGGTGTTGAAACTGAATATGACCCAAACTTTGACAGTGAGAGTTCACAGTC
TTCAAGCACAAGGCAAGAGCACCAACAAGATGTAACCTCTGTAACCAAAAGGAAGGCTGG
TAAATCTGTTCTTATCAGGCAGGAAGAGCGGGAAACTGGTATTATCAACTGGAGTGTTTT
GATGAGGTAACAAGTTAATGTATATGCTTTGAGACATTTATCCTTGGAAATTTTAATCAA
GTCACTCAGACATGAATATCCTGGTAATTCAACAATTTTAGAATCCTAATTTCTTTTTCA
GAATTTTTAAAAAGACGAGACTTACAACATTTATTAAGAGAAAAATTCATGGCACAAACT
TTTCTCAAATATTTCCATTCTCTTGCTTCTCCCATTGCATCTAGACACTGGTGGAATTAA
AAAATGTTATTGTCTGTAGTGCATAGTTTCTAGCATGGGCCTTGGAATATTCCATTTATT
TCTAGTGGTTTGTGTACCCCCTTTAGGAACACAACATCATCGTTGAGGTTTTCCTAATCT
CCATACTAGGGGATGTGTCGGCTCCAATACCACCTGTAATAGCTAGGCCCCAACTGCCAA