Replace 7_Command_Lines_R.txt

7_Command_Lines_R.txt

-#Command Lines used to plot the bimodal distribution:
+#Command Lines used to plot the bimodal distribution:
     #The chosen input file contained the GC and GC3 values against their percentage in the CDS
+    #This example presents the GC3 plot, different parameters in stat_smooth were used for the GC plot
 >GC3 <- read.table(choose.files(), h=T)
 >ggplot(GC3, aes(GC3, CDS))
 +geom_point()
-+geom_lline(color=”red”)
++stat_smooth(method='lm',formula=y~poly(x^2,4),size=2,color='red')
 +ggtitle(“B”)
 
 #Command Lines used for randomization:
@@ -19,4 +20,9 @@
 +geom_point()
 +geom_smooth(color="red",size=3)
 +stat_function(fun=dnorm,color="grey")
-+geom_point(data=NDobs,shape=21,color="black",fill="yellow",size=3,stroke=3)
\ No newline at end of file
++geom_point(data=NDobs,shape=21,color="black",fill="yellow",size=3,stroke=3)
+
+#Command Lines used to plot GC3 content of loci harbouring mPing:
+>GC3plotmPing <- read.table(choose.files(),h=T)
+>ggplot(GC3plotmPing, aes(GC3, Appearance))+geom_point()+stat_smooth(method='lm',formula=y~poly(x^4,8),color='red',size=2)+ggtitle("590 loci harbouring mPing")
+