Commits · master · UNLOCK / scripts

Jun 30, 2022
- output change · 7300e702
  Bart authored 2 years ago
  
  7300e702
Jun 22, 2022
- contig sizes fix · b983dc98
  Bart authored 2 years ago
  
  b983dc98
Jun 02, 2022
- basic statistics from a carveme GEM · fba56a18
  Bart authored 2 years ago
  
  fba56a18
May 24, 2022
- checkm report parsing simplified and fixed · 66c59c4e
  Bart authored 3 years ago
  
  66c59c4e
May 16, 2022
- Merge branch 'master' of git.wur.nl:unlock/scripts · 378fd0f8
  Bart authored 3 years ago
  
  378fd0f8
- some renaming · fb63b5b8
  Bart authored 3 years ago
  
  fb63b5b8
- moved to metagenomics · 73e07d70
  Bart authored 3 years ago
  
  73e07d70
May 13, 2022
- Merge branch 'master' of git.wur.nl:unlock/scripts · 207a8e95
  Jasper Koehorst authored 3 years ago
  
  207a8e95
- ontology update · 0e02a472
  Jasper Koehorst authored 3 years ago
  
  0e02a472
- setup script added · 7a4418f2
  Jasper Koehorst authored 3 years ago
  
  7a4418f2
Apr 25, 2022
- add largest contig · 74d668d8
  Bart authored 3 years ago
  
  74d668d8
Apr 22, 2022
- Creates a summary of bins from different tools · 13c9a4f0
  Bart authored 3 years ago
  
  13c9a4f0
- fixe to ignore unbinned contigs bin · 4a73593b
  Bart authored 3 years ago
  
  4a73593b
Feb 02, 2022
- change from bbmap log to samtools flagstat output · 2234e943
  Bart authored 3 years ago
  
  2234e943
Jan 28, 2022
- size bug fix · af4dae74
  Jasper Koehorst authored 3 years ago
  
  af4dae74
- medaka sync · 39167e17
  Jasper Koehorst authored 3 years ago
  
  39167e17
- sync · 6eb19d18
  Jasper Koehorst authored 3 years ago
  
  6eb19d18
- bug fixes · 5617ab74
  Jasper Koehorst authored 3 years ago
  
  5617ab74
- medaka parallelisation · 5bc16ad3
  Jasper Koehorst authored 3 years ago
  
  5bc16ad3
Nov 02, 2021
- instead of pivot use direct building due to size limitations · 916f5181
  Jasper Koehorst authored 3 years ago
  
  916f5181
Oct 15, 2021
- move · fc18382b
  Bart authored 3 years ago
  
  fc18382b
- move · 7d7af0fd
  Bart authored 3 years ago
  
  7d7af0fd
- rsync thing · e19e1cb9
  Bart authored 3 years ago
  
  e19e1cb9
- general statistics about read mapping of bins and the assembly · eb7ced6e
  Bart authored 3 years ago
  
  eb7ced6e
Oct 13, 2021
- shebang · db081f1f
  Bart authored 3 years ago
  
  db081f1f
- bin assembly stats script · c16434f0
  Bart authored 3 years ago
  
  c16434f0
Sep 28, 2021
- duplication issue due to multiple ttl files · 9f055c2d
  Jasper Koehorst authored 3 years ago
  
  9f055c2d
Sep 23, 2021
- biom scripts · a32194bf
  Jasper Koehorst authored 3 years ago
  
  a32194bf
Sep 21, 2021
- clean up · abbcda63
  Jasper Koehorst authored 3 years ago
  
  abbcda63
- pathway info · a09ed032
  Jasper Koehorst authored 3 years ago
  
  a09ed032
- biom creation for picrust data · 59b50172
  Jasper Koehorst authored 3 years ago
  
  59b50172
Sep 20, 2021
- picrust export module · 27198b8f
  Jasper Koehorst authored 3 years ago
  
  27198b8f
- taxonomy split fix · 4c7e0611
  Jasper Koehorst authored 3 years ago
  
  4c7e0611
Sep 17, 2021
- fixed label issue of sample and assay metadata fields · 16167999
  Jasper Koehorst authored 3 years ago
  
  16167999
- Merge branch 'master' of https://git.wageningenur.nl/unlock/scripts · 317b710c
  Jasper Koehorst authored 3 years ago
  
  317b710c
- add all keys to each sample and sort the biom file to ensure that metadata is ordered · 15f60d2d
  Jasper Koehorst authored 3 years ago
  
  15f60d2d
Sep 09, 2021
- exclude .git for rsync. Infrastructure only sync · bdda1ce0
  Bart authored 3 years ago
  
  bdda1ce0
Sep 08, 2021
- fastq to fasta format · c41d8e48
  Bart authored 3 years ago
  
  c41d8e48
Aug 30, 2021
- append needed for metadata · 5f573599
  Jasper Koehorst authored 3 years ago
  
  5f573599
- destination and upload section removed · 83b3dc19
  Jasper Koehorst authored 3 years ago
  
  83b3dc19