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UNLOCK
irodstransfer
Commits
d2cc4856
Commit
d2cc4856
authored
2 years ago
by
Jasper Koehorst
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yoda example added (renewed password)
parent
a7059140
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Pipeline
#49486
failed
2 years ago
Stage: test_build
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src/test/java/YodaTest.java
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src/test/java/YodaTest.java
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View file @
d2cc4856
...
...
@@ -8,171 +8,12 @@ import org.junit.Assert;
import
org.junit.Before
;
import
org.junit.Test
;
import
java.io.File
;
import
java.io.FileNotFoundException
;
import
java.lang.reflect.Field
;
import
java.nio.file.FileAlreadyExistsException
;
import
java.util.Map
;
import
java.util.Scanner
;
public
class
PushTest
{
@Before
public
void
setEnv
()
throws
FileNotFoundException
{
// Scanner scanner = new Scanner(new File("config.txt"));
// while (scanner.hasNextLine()) {
// String[] line = scanner.nextLine().split("\\s+");
// System.err.println(StringUtils.join(line, "\t"));
// setEnv(line[0], line[1]);
// }
}
@Before
public
void
cleanIRODS
()
throws
JargonException
,
FileNotFoundException
{
setEnv
();
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/TEST1.txt"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst"
};
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/secondFolder"
).
delete
();
}
// - Push a local file to an existing remote location (create)
@Test
public
void
test1
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/TEST1.txt"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST1.txt"
).
delete
();
}
// - Push a local file to a non-existing file location (rename)
@Test
public
void
test2
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/TEST1.txt"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/TESTRename.txt"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRename.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRename.txt"
).
delete
();
}
// - Push multiple local files to an existing remote folder location
@Test
public
void
test3
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/TEST1.txt"
,
"./src/test/resources/upload/TEST2.txt"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST2.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST1.txt"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TEST2.txt"
).
delete
();
}
// - Push multiple local files to a non-existing remote folder location (create path)
@Test
public
void
test4
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/TEST1.txt"
,
"./src/test/resources/upload/TEST2.txt"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/NONEXISTING"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/NONEXISTING/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/NONEXISTING/TEST2.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/NONEXISTING/TEST1.txt"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/NONEXISTING/TEST2.txt"
).
delete
();
}
// - Push a single local folder to an existing remote location (create)
@Test
public
void
test5
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/upload/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/upload"
).
delete
();
}
// - Push a single local folder to an existing remote location with the same name (upload content)
@Test
public
void
test5b
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/upload"
};
App
.
main
(
args
);
// CommandOptions commandOptions = new CommandOptions(args);
// Connection connection = new Connection(commandOptions);
// Assert.assertEquals(true, connection.fileFactory.instanceIRODSFile("/unlock/home/koehorst/upload/TEST1.txt").isFile());
// connection.fileFactory.instanceIRODSFile("/unlock/home/koehorst/upload").delete();
}
// - Push a single local folder to a remote non-existing folder location (rename)
@Test
public
void
test6
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/TESTRENAMEFOLDER"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRENAMEFOLDER/upload/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRENAMEFOLDER/upload/firstFolder/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRENAMEFOLDER/upload/secondFolder/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/TESTRENAMEFOLDER"
).
delete
();
}
//- Push multiple folders to a remote existing folder location (create)
@Test
public
void
test7
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/firstFolder"
,
"./src/test/resources/upload/secondFolder"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/secondFolder/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/secondFolder"
).
delete
();
}
//- Push multiple folders to a remote non-existing folder location (create)
@Test
public
void
test8
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/firstFolder"
,
"./src/test/resources/upload/secondFolder"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/new"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/new/firstFolder/TEST1.txt"
).
isFile
());
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/new/secondFolder/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/new"
).
delete
();
}
// Duplicate entry
@Test
public
void
test9
()
throws
FileAlreadyExistsException
,
JargonException
,
GenQueryBuilderException
,
JargonQueryException
,
FileNotFoundException
{
String
[]
args
=
{
"-values"
,
"./src/test/resources/upload/firstFolder"
,
"./src/test/resources/upload/firstFolder"
,
"--push"
,
"--irods"
,
"/unlock/home/koehorst/"
};
App
.
main
(
args
);
CommandOptions
commandOptions
=
new
CommandOptions
(
args
);
Connection
connection
=
new
Connection
(
commandOptions
);
Assert
.
assertEquals
(
true
,
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder/TEST1.txt"
).
isFile
());
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/secondFolder"
).
delete
();
}
public
class
YodaTest
{
@Test
public
void
testYoda
()
throws
JargonException
{
...
...
@@ -182,12 +23,18 @@ public class PushTest {
// --password vanrar-tixsi8-jotcoX
// --username jasper.koehorst@wur.nl --local ..... --sslpolicy CS_DONT_CARE
String
[]
args
=
{
"--password"
,
"vanrar-tixsi8-jotcoX"
,
"--host"
,
"wur-yoda.irods.surfsara.nl"
,
"--port"
,
"1247"
,
"--username"
,
"jasper.koehorst@wur.nl"
,
"--zone"
,
"wur"
,
"--authentication"
,
"pam"
,
"--password"
,
"vanrar-tixsi8-jotcoX"
,
"--sslpolicy"
,
"CS_NEG_DONT_CARE"
,
"--values"
,
"/Volumes/unlock-icat.irods.surfsara.nl/projects/PRJ_UNLOCK/INV_TEST/STU_denbi-nanopore-training-course/OBS_fast5_small"
,
"--push"
,
"--irods"
,
"/
unlock/home/koehorst
/"
};
"--irods"
,
"/
wur/home/research-ssb-projects-example
/"
};
CommandOptions
commandOptions2
=
new
CommandOptions
(
args
);
...
...
@@ -200,17 +47,4 @@ public class PushTest {
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/firstFolder"
).
delete
();
connection
.
fileFactory
.
instanceIRODSFile
(
"/unlock/home/koehorst/secondFolder"
).
delete
();
}
public
static
void
setEnv
(
String
key
,
String
value
)
{
try
{
Map
<
String
,
String
>
env
=
System
.
getenv
();
Class
<?>
cl
=
env
.
getClass
();
Field
field
=
cl
.
getDeclaredField
(
"m"
);
field
.
setAccessible
(
true
);
Map
<
String
,
String
>
writableEnv
=
(
Map
<
String
,
String
>)
field
.
get
(
env
);
writableEnv
.
put
(
key
,
value
);
}
catch
(
Exception
e
)
{
throw
new
IllegalStateException
(
"Failed to set environment variable"
,
e
);
}
}
}
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