database files added from irods

cwl/builder/docker/kofamscan/Dockerfile

@@ -21,7 +21,6 @@ RUN conda-pack -n start -o /tmp/env.tar && \
 # so now fix up paths:
 RUN /venv/bin/conda-unpack
 
-
 # The runtime-stage image; we can use Debian as the
 # base image since the Conda env also includes Python
 # for us.
@@ -34,9 +33,19 @@ COPY --from=build /venv /venv
 COPY start.sh /start.sh
 
 # Custom things here
-RUN echo 2
+RUN echo 3
 RUN apt-get update && \
     apt-get install --yes wget && \
     wget http://download.systemsbiology.nl/sapp/SAPP-2.0.jar
 
+RUN apt-get update && \
+    apt-get install --yes wget && \
+    wget --http-user anonymous --http-password anonymous https://unlock-icat.irods.surfsara.nl/references/databases/KEGG/ko_list.tar.gz && \
+    wget --http-user anonymous --http-password anonymous https://unlock-icat.irods.surfsara.nl/references/databases/KEGG/profiles.tar.gz && \
+    tar -xvf ko_list.tar.gz && \
+    tar -xvf profiles.tar.gz && \
+    rm ko_list.tar.gz && \
+    rm profiles.tar.gz
+
+
 ENTRYPOINT ["bash", "/start.sh"] 
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