Commit b84fe3d0 authored by Koehorst, Jasper's avatar Koehorst, Jasper
Browse files

database files added from irods

parent a042a8c4
......@@ -21,7 +21,6 @@ RUN conda-pack -n start -o /tmp/env.tar && \
# so now fix up paths:
RUN /venv/bin/conda-unpack
# The runtime-stage image; we can use Debian as the
# base image since the Conda env also includes Python
# for us.
......@@ -34,9 +33,19 @@ COPY --from=build /venv /venv
COPY start.sh /start.sh
# Custom things here
RUN echo 2
RUN echo 3
RUN apt-get update && \
apt-get install --yes wget && \
wget http://download.systemsbiology.nl/sapp/SAPP-2.0.jar
RUN apt-get update && \
apt-get install --yes wget && \
wget --http-user anonymous --http-password anonymous https://unlock-icat.irods.surfsara.nl/references/databases/KEGG/ko_list.tar.gz && \
wget --http-user anonymous --http-password anonymous https://unlock-icat.irods.surfsara.nl/references/databases/KEGG/profiles.tar.gz && \
tar -xvf ko_list.tar.gz && \
tar -xvf profiles.tar.gz && \
rm ko_list.tar.gz && \
rm profiles.tar.gz
ENTRYPOINT ["bash", "/start.sh"]
\ No newline at end of file
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