10-geoscripting

+[apps/indicator-session]
+suppress-shutdown-menuitem=true
+
+[org/gnome/desktop/wm/preferences]
+button-layout=':minimize,maximize,close'
+
+[org/gnome/desktop/screensaver]
+lock-enabled=false
+
+[org/gnome/desktop/lockdown]
+disable-lock-screen=true

CleanUnnecessarySoftware.sh

+#!/bin/bash
+# DM: Remove unnecessary software from VDIs
+
+# DM: Remove rsyslog, already have journald; snapd is for servers
+sudo systemctl disable rsyslog snapd
+sudo systemctl stop rsyslog syslog.socket snapd snapd.socket
+
+# DM: Remove extra browsers, text editors, terminals, games, scanning, large docs
+sudo apt purge --auto-remove rsyslog snapd chromium-browser thunderbird vim vim-common xterm gnome-user-guide libreoffice-help-en-gb libreoffice-help-en-us aisleriot gnome-mahjongg gnome-mines gnome-sudoku shotwell cheese simple-scan gnome-screensaver 
+# DM: If using Xfce, we do not use indicators, can remove
+#sudo apt purge --auto-remove indicator-session indicator-applet indicator-applet-complete indicator-application indicator-bluetooth indicator-datetime indicator-keyboard indicator-messages indicator-power indicator-printers indicator-sound
+# DM: If using Xfce, remove GNOME utilities that duplicate Xfce ones
+#sudo apt purge --auto-remove unity gedit nautilus eog gnome-system-monitor gnome-terminal evolution-data-server network-manager-gnome network-manager-pptp-gnome light-locker xscreensaver blueman
+
+# Clean all old kernels
+sudo apt install byobu
+sudo purge-old-kernels --keep 1
+sudo apt purge --auto-remove byobu
+
+# Remove unneeded packages and clean cache
+sudo apt autoremove
+sudo apt clean

InstallScriptGeoscripting.sh

 #!/bin/sh
 # Script for installing necessary software on an Ubuntu 16.04 VM
 
+# WARNING: You should manually run an apt update && apt upgrade before this in an ssh session! Ideally also reboot between that and running this script.
+
 # DM: VMWare Horizon settings: do not inherit keyboard layouts
 sudo sed -i "s/#KeyboardLayoutSync=FALSE/KeyboardLayoutSync=FALSE/" /etc/vmware/viewagent-custom.conf
+# DM: Set to use GNOME Flashback
+sudo sed -i "s/#UseGnomeFlashback=TRUE/UseGnomeFlashback=TRUE/" /etc/vmware/viewagent-custom.conf
+echo "SSODesktopType=UseGnomeFlashback" | sudo tee -a /etc/vmware/viewagent-custom.conf
 # DM: Set sudo timeout to an hour
 sudo sed -i "s/Defaults\tenv_reset/Defaults\tenv_reset,timestamp_timeout=60/" /etc/sudoers
+# DM: Disable prompt to upgrade to 18.04, that would be disastrous for current VMWare version
+sudo sed -i "s/Prompt=.*/Prompt=never/" /etc/update-manager/release-upgrades
 
 # DM: Update
 sudo apt update
-sudo apt upgrade
+sudo apt-mark hold samba
+sudo apt upgrade # Use SSH to upgrade and keep local file for Samba
 
+# DM: Current VMWare Horizon apparently bugs out when Xfce is used. Stay with GNOME Flashback for the time being.
 # DM: Install Xfce
-sudo apt install xubuntu-desktop
+#sudo apt install xubuntu-desktop
 # DM: Disable shutdown/reboot buttons
-sudo mkdir /etc/xdg/xfce4/kiosk
-sudo cp kioskrc /etc/xdg/xfce4/kiosk
+#sudo mkdir /etc/xdg/xfce4/kiosk
+#sudo cp kioskrc /etc/xdg/xfce4/kiosk
 # DM: Set default panel layout
-sudo cp xfce4-panel.xml /etc/xdg/xfce4/xfconf/xfce-perchannel-xml/
+#sudo cp xfce4-panel.xml /etc/xdg/xdg-xubuntu/xfce4/panel/default.xml
 # DM: Set Xfce as default in LightDM
-sudo sed -i "s/user-session=ubuntu/user-session=xubuntu/" /etc/lightdm/lightdm.conf
+#sudo sed -i "s/user-session=ubuntu/user-session=xubuntu/" /etc/lightdm/lightdm.conf
+
+# DM: GNOME Fallback options instead, based on dconf
+sudo cp user /etc/dconf/profile/
+sudo mkdir /etc/dconf/db/geoscripting.d
+sudo cp 10-geoscripting /etc/dconf/db/geoscripting.d
+sudo dconf update
 
 # DM: GDAL, GEOS, Fiona, SpatiaLite
 sudo add-apt-repository ppa:ubuntugis/ppa
 # DM: RKWard compiled against CRAN
 sudo add-apt-repository ppa:rkward-devel/rkward-stable-cran
 
-sudo apt install sshfs mesa-utils manpages firefox spyder gdebi-core
-sudo apt install spatialite-gui spatialite-bin gdal-bin git-gui qgis python-qgis
+# DS: Upgrade software from repositories
+sudo apt update
+sudo apt upgrade
+
+# DS: Install software
+sudo apt install -y sshfs mesa-utils manpages firefox gdebi-core curl
+sudo apt install -y spatialite-gui spatialite-bin gdal-bin git-gui qgis python-qgis
+
+# DS: Install Grass and hold version to 7.0.3 
+sudo apt install -y grass=7.0.3-1build1 grass-core=7.0.3-1build1 grass-doc=7.0.3-1build1 grass-gui=7.0.3-1build1
+sudo apt-mark hold grass grass-gui grass-doc grass-core
 
 # DM: Add Git GUI into the menu
 sudo mkdir /usr/local/share/applications/
 sudo cp git-gui.desktop /usr/local/share/applications/
 
 # DM: Install R from the CRAN repository and RKWard
-sudo add-apt-repository "deb http://cran-mirror.cs.uu.nl/bin/linux/ubuntu xenial/"
+sudo add-apt-repository "deb http://cloud.r-project.org/bin/linux/ubuntu/ xenial/"
 sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
-sudo apt update && sudo apt install r-base r-base-dev rkward
+sudo apt update && sudo apt install -y r-base r-base-dev rkward
 
 # RStudio installation
-RSTUDIO_VERSION="1.1.383"
+RSTUDIO_VERSION="1.1.456"
 pushd /tmp
 wget https://download1.rstudio.org/rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb
 sudo gdebi -n rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb
@@ -46,53 +70,43 @@ rm rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb
 popd
 
 # Install requirements for packages not part of the CRAN distribution
-sudo apt-get install libgdal-dev libgeos-dev libproj-dev libxml2-dev libcurl4-openssl-dev libssl-dev libudunits2-dev liblwgeom-dev
+sudo apt install -y libgdal-dev libgeos-dev libproj-dev libxml2-dev libcurl4-openssl-dev libssl-dev libudunits2-dev liblwgeom-dev
 # Source-install "raster", "googleVis", "lubridate", "leaflet".
 # Make sure to use a directory common to RStudio and RKWard: RKWard settings
 # ~/R/x86_64-pc-linux-gnu-library/3.2
-sudo apt install r-cran-spatstat r-cran-jsonlite r-cran-zoo r-cran-magrittr r-cran-stringr r-cran-ggplot2
-sudo apt install r-cran-colorspace r-cran-yaml r-cran-digest r-cran-rcpp r-cran-mime r-cran-dichromat r-cran-plyr r-cran-munsell r-cran-labeling r-cran-base64enc r-cran-rcolorbrewer r-cran-scales r-cran-sp
+sudo apt install -y r-cran-spatstat r-cran-jsonlite r-cran-zoo r-cran-magrittr r-cran-stringr r-cran-ggplot2
+sudo apt install -y r-cran-colorspace r-cran-yaml r-cran-digest r-cran-rcpp r-cran-mime r-cran-dichromat r-cran-plyr r-cran-munsell r-cran-labeling r-cran-base64enc r-cran-rcolorbrewer r-cran-scales r-cran-sp
 
 # QGIS
 # DM: NOTE: Check if the key changes in 2018!
 #sudo add-apt-repository http://qgis.org/debian
 #sudo apt-key adv --keyserver http://qgis.org/downloads/qgis-2017.gpg.key --recv-keys CAEB3DC3BDF7FB45
-#sudo apt-get update && sudo apt-get install qgis python-qgis  
+#sudo apt update && sudo apt install qgis python-qgis  
+
+# Miniconda: this should be done by the students themselves!
+#MINICONDA_VERSION="Miniconda3-latest-Linux-x86_64"
+#pushd /tmp
+#curl -O https://repo.continuum.io/miniconda/${MINICONDA_VERSION}.sh
+#bash ${MINICONDA_VERSION}.sh
+#rm ${MINICONDA_VERSION}.sh
+#popd
 
 # PostGIS
 sudo add-apt-repository "deb http://apt.postgresql.org/pub/repos/apt xenial-pgdg main"
 sudo apt-key adv --keyserver http://apt.postgresql.org/pub/repos/apt/ACCC4CF8.asc --recv-keys ACCC4CF8
-sudo apt-get update
-sudo apt-get install postgresql-9.5-postgis-2.2 pgadmin3 postgresql-contrib-9.5 postgresql-9.5-postgis-2.2-scripts postgresql-server-dev-9.5 libpq-dev
+sudo apt update
+sudo apt install -y postgresql-9.5-postgis-2.2 pgadmin3 postgresql-contrib-9.5 postgresql-9.5-postgis-2.2-scripts postgresql-server-dev-9.5 libpq-dev
 # DM: Create a user and a database with these credentials
 PGUSER="geoscripting"
-PGPASS="geoscripting"
+export PGPASSWORD="geoscripting"
 PGDB="geoscripting"
 sudo -u postgres psql -c "CREATE ROLE ${PGUSER} WITH LOGIN CREATEDB"
-sudo -u postgres psql -c "ALTER ROLE ${PGUSER} WITH PASSWORD '${PGPASS}'"
+sudo -u postgres psql -c "ALTER ROLE ${PGUSER} WITH PASSWORD '${PGPASSWORD}'"
 psql -h localhost -U ${PGUSER} -d postgres -c "CREATE DATABASE ${PGDB}"
 sudo -u postgres psql -d ${PGDB} -c "CREATE EXTENSION postgis;"
 # DM: New tables can be added with:
 #psql -h localhost -U ${PGUSER} -d ${PGDB} -f table_creation_statements.sql
 
-# Remove unnecessary software
-
-# Remove rsyslog, already have journald; snapd is for servers; don't need two browsers
-# Vim is confusing and there is nano already, unity and gnome-flashback no longer needed
-# Also remove gnome utilities with Xfce equivalents and games
-sudo systemctl disable rsyslog snapd
-sudo systemctl stop rsyslog syslog.socket snapd snapd.service
-sudo apt purge --auto-remove indicator-session indicator-applet indicator-applet-complete indicator-application indicator-bluetooth indicator-datetime indicator-keyboard indicator-messages indicator-power indicator-printers indicator-sound \
-  rsyslog snapd chromium-browser vim vim-common gnome-user-guide unity gnome-flashback gedit nautilus aisleriot gnome-mahjongg gnome-mines gnome-sudoku shotwell simple-scan eog usb-creator-common gnome-system-monitor gnome-terminal \
-  blueman evolution-data-server network-manager-gnome network-manager-pptp-gnome xscreensaver gnome-screensaver light-locker
-
-# Clean all old kernels
-sudo apt install byobu
-sudo purge-old-kernels --keep 1
-sudo apt purge --auto-remove byobu
-
-# Remove unneeded packages and clean cache
-sudo apt autoremove
-sudo apt-get clean
+echo "Please restart and then run ./CleanUnnecessarySoftware.sh!"
 
 # Settings: Mousepad should have View -> Color Scheme set

user

+user-db:user
+system-db:geoscripting