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Commit 60c51ee2 authored by Stefan J.S. van de Ruitenbeek's avatar Stefan J.S. van de Ruitenbeek :desktop:
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improve threading by hisat2 align

parent 732a32e2
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......@@ -69,7 +69,7 @@ rule hisat2_align:
conda:
"envs/bam.yml"
priority: 1
threads: 8
threads: 4
shell:
"./workflow/scripts/hisat2-wrapper.py -p {threads} -x {params.prefix} -S {output} "
"{input.fasta} {params.paired} 2> {log}"
......
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