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- LICENSE 661 additions, 0 deletionsLICENSE
- README.md 152 additions, 2 deletionsREADME.md
- build.xml 93 additions, 0 deletionsbuild.xml
- build/built-jar.properties 4 additions, 0 deletionsbuild/built-jar.properties
- build/classes/alignment/BoundedLocalSequenceAlignment.class 0 additions, 0 deletionsbuild/classes/alignment/BoundedLocalSequenceAlignment.class
- build/classes/alignment/LocalSequenceAlignment.class 0 additions, 0 deletionsbuild/classes/alignment/LocalSequenceAlignment.class
- build/classes/index/IndexDatabase.class 0 additions, 0 deletionsbuild/classes/index/IndexDatabase.class
- build/classes/index/IndexPointer.class 0 additions, 0 deletionsbuild/classes/index/IndexPointer.class
- build/classes/index/IndexScanner.class 0 additions, 0 deletionsbuild/classes/index/IndexScanner.class
- build/classes/index/kmer.class 0 additions, 0 deletionsbuild/classes/index/kmer.class
- build/classes/pangenome/AnnotationLayer$IntPairComparator.class 0 additions, 0 deletions...classes/pangenome/AnnotationLayer$IntPairComparator.class
- build/classes/pangenome/AnnotationLayer$feature.class 0 additions, 0 deletionsbuild/classes/pangenome/AnnotationLayer$feature.class
- build/classes/pangenome/AnnotationLayer.class 0 additions, 0 deletionsbuild/classes/pangenome/AnnotationLayer.class
- build/classes/pangenome/GenomeLayer$Generate_fatsq_records.class 0 additions, 0 deletions...lasses/pangenome/GenomeLayer$Generate_fatsq_records.class
- build/classes/pangenome/GenomeLayer$IntComparator.class 0 additions, 0 deletionsbuild/classes/pangenome/GenomeLayer$IntComparator.class
- build/classes/pangenome/GenomeLayer$IntPairComparator.class 0 additions, 0 deletionsbuild/classes/pangenome/GenomeLayer$IntPairComparator.class
- build/classes/pangenome/GenomeLayer$Map.class 0 additions, 0 deletionsbuild/classes/pangenome/GenomeLayer$Map.class
- build/classes/pangenome/GenomeLayer$paired_hit.class 0 additions, 0 deletionsbuild/classes/pangenome/GenomeLayer$paired_hit.class
- build/classes/pangenome/GenomeLayer$paired_hitComparator.class 0 additions, 0 deletions.../classes/pangenome/GenomeLayer$paired_hitComparator.class
- build/classes/pangenome/GenomeLayer$read.class 0 additions, 0 deletionsbuild/classes/pangenome/GenomeLayer$read.class
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