Commits · master · rev_polyploids / PolyHaplotyper · GitLab

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Feb 08, 2021
- Added the PolyHaplotyper_small dataset and a minot correction · 16aac68c
  Voorrips, Roeland authored 4 years ago
  
  16aac68c
Feb 05, 2021
- Added examples and other fixes to meet CRAN requirements · 733304ba
  Voorrips, Roeland authored 4 years ago
  
  733304ba
Nov 17, 2020
- Last changes (hopefully) for publication: demo data for vignette changed,... · 84bb060c
  Voorrips, Roeland authored 4 years ago
  84bb060c
Oct 02, 2020
- Anonymized demo data; fixed import of XML package; lots of code and... · 003e3082
  Voorrips, Roeland authored 4 years ago
  003e3082
Jul 14, 2020
- Revert "Major revision 20200713: (1) more parental combinations are considered... · c7761501
  Voorrips, Roeland authored 4 years ago
  c7761501
- Major revision 20200713: (1) more parental combinations are considered to fit... · dbd0df71
  Voorrips, Roeland authored 4 years ago
  dbd0df71
Jun 30, 2020
- minor changes in DESCRIPTION, testthat, vignette until 20200114 · ae6e9a7d
  Voorrips, Roeland authored 4 years ago
  
  ae6e9a7d
Jan 13, 2020
- Several bugs fixed as reported by Peter and Giorgio nov-dec 2019 · 5da9b5a8
  Voorrips, Roeland authored 5 years ago
  
  5da9b5a8
Apr 01, 2019
- Corrected the vignette and some roxygen documentation · 64eed98f
  Voorrips, Roeland authored 6 years ago
  
  64eed98f
Mar 29, 2019
- Bug fixes and some documentation improvements · a3a7ceb5
  Voorrips, Roeland authored 6 years ago
  
  a3a7ceb5
Jan 11, 2019
- Completely revised. New loop structure to iterate until set of solutions over... · 00c3c48d
  Voorrips, Roeland authored 6 years ago
  00c3c48d
Oct 01, 2018
- Some corrected comments and documentation; a correction in... · e0576348
  Voorrips, Roeland authored 6 years ago
  e0576348
Aug 13, 2018
- Corrected and updated help texts, vignette, a.o. to · 4aacd15e
  Voorrips, Roeland authored 6 years ago
  4aacd15e
Aug 07, 2018
- Large code and comments cleanup; duplicated part of hapOneBlock as function;... · 08e22d01
  Voorrips, Roeland authored 6 years ago
  08e22d01
- Version 0.2.1 Major changes, a.o. storing ahc(complete)lists as hap... · 7ef2be6e
  Voorrips, Roeland authored 6 years ago
  7ef2be6e
Mar 06, 2018
- Solved bug in processSOF · 4aeb44c6
  unknown authored 7 years ago
  
  4aeb44c6
Nov 30, 2017
- bug in calcStatistics when only one haploblock; solved · f957fd16
  Voorrips, Roeland authored 7 years ago
  
  f957fd16
- Some bug fixes for haploblocks with only 1 marker · 2d8d4f71
  unknown authored 7 years ago
  
  2d8d4f71
Oct 30, 2017
- in single_cycle_infer: changed the selection criterion for haploype combinations · 4a40b6c9
  Voorrips, Roeland authored 7 years ago
  
  4a40b6c9
Oct 20, 2017
- Some bug fixes; streamlined hapOneBlock · b9aec38e
  Voorrips, Roeland authored 7 years ago
  
  b9aec38e
Oct 06, 2017
- inferHaplotypes uses new criterion to select haplotype combinations (least nr... · 9944bcc2
  Voorrips, Roeland authored 7 years ago
  9944bcc2
Sep 27, 2017
- Large cleanup and revision of code, documentation and vignette. Main function... · ae4e5739
  unknown authored 7 years ago
  ae4e5739
Aug 11, 2017
- Improved function solveOneF1, cleaned up the code, extended vignette · fb302fb1
  Voorrips, Roeland authored 7 years ago
  
  fb302fb1
Aug 03, 2017
- Vignette and data added, some functions renamed · b4a0fb14
  Voorrips, Roeland authored 7 years ago
  
  b4a0fb14
Jul 25, 2017
- various bug fixes, new function haploblock_df2list · c9190a5a
  Voorrips, Roeland authored 7 years ago
  
  c9190a5a
Jun 13, 2017
- Added several diagnostics, overview and summary functions and some extra documentation · e8280069
  Voorrips, Roeland authored 8 years ago
  
  e8280069
Jun 02, 2017
- Added and tested pedigreeHapdosCheck and expandHapdos · 25b88a18
  Voorrips, Roeland authored 8 years ago
  
  25b88a18
May 26, 2017
- Improvements debugged. Results more trustworthy (though less appealing) than... · ce1d2e61
  Voorrips, Roeland authored 8 years ago
  ce1d2e61
May 23, 2017
- rewrote haplotypeDosagesF1 to use segregation rates (untested yet). Found that... · 6c815f3d
  Voorrips, Roeland authored 8 years ago
  6c815f3d
May 16, 2017
- Bug fixes; more output in haplotypeDosagesF1; works through Geert's 4- and 5-SNP data of March 2017 · b85fcef9
  Voorrips, Roeland authored 8 years ago
  
  b85fcef9
May 11, 2017
- Lots of bug fixes. Geert's original dat now run fine again. · 46157a0c
  Voorrips, Roeland authored 8 years ago
  
  46157a0c
Apr 24, 2017
- new function solveAllHaploblocks. Still checking first 4 of Geerts "old"... · 483f1b7d
  Voorrips, Roeland authored 8 years ago
  483f1b7d
Apr 21, 2017
- new untested haplotypeDosagesF1 for multiple F1s. Issues with ahc(complete)list in check package · 73160ccf
  Voorrips, Roeland authored 8 years ago
  
  73160ccf
Apr 10, 2017
- new completeAllHaploComb. Start with use of multiple F1 populations. · 5b4cabbc
  Voorrips, Roeland authored 8 years ago
  
  5b4cabbc
Mar 23, 2017
- many changes, esp. in allHaploComb and haplotypeDosagesF1; global variables ahcploidy and ahclist · 32c7b45b
  Voorrips, Roeland authored 8 years ago
  
  32c7b45b
Feb 27, 2017
- second minfrac value · 1226128d
  Voorrips, Roeland authored 8 years ago
  
  1226128d
Feb 21, 2017
- improvement of haplotypeDosagesF1. Replaced all (contig) alleles by haplotypes. · baabaffe
  Voorrips, Roeland authored 8 years ago
  
  baabaffe
Feb 15, 2017
- First commit; working version with documentation. · f51391b1
  Voorrips, Roeland authored 8 years ago
  
  f51391b1