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Commit d7a23d09 authored by Staiger, Christine's avatar Staiger, Christine
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Update README_CLI.md

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...@@ -18,41 +18,30 @@ pip install python-irodsclient ...@@ -18,41 +18,30 @@ pip install python-irodsclient
## Configuration ## Configuration
- Minimal configuration file (upload to iRODS only): - Minimal configuration file for uploading data to iRODs:
``` ```
[iRODS] [iRODS]
irodsenv = <path to>/irods_environment.json irodsenv = /<path to>/irods_environment.json
irodscoll = irodscoll =
irodsresc = irodsresc =
webdav = webdav =
``` ```
- Configuration files for the iRODS-Elab instance - Configuration file for downloading data from iRODS:
- The iRODS instance is SSL encrypted to allow for interactions with LDAP, you can use your WUR-account and password to login. ```
- You need an irods.crt file (contact iRODS admin) [iRODS]
- You need to be on the WUR-VPN irodsenv = /<path to>/irods_environment.json
- iRODS environment file: irodscoll =
irodsresc =
webdav =
``` [DOWNLOAD]
{ path = /path/to/download/directory
"irods_host": "scomp1486.wurnet.nl", ```
"irods_port": 1247,
"irods_zone_name": "elabZone",
"irods_user_name": "<WUR-account>",
"irods_client_server_negotiation": "request_server_negotiation",
"irods_client_server_policy": "CS_NEG_REQUIRE",
"irods_encryption_key_size": 32,
"irods_encryption_salt_size": 8,
"irods_encryption_num_hash_rounds": 16,
"irods_encryption_algorithm": "AES-256-CBC",
"irods_ssl_ca_certificate_file": "<path to>/irods.crt",
"irods_authentication_scheme": "PAM"
}
```
- Config file for the upload client (upload to iRODs and linking in ELN) - Configuration files for uploading data to iRODS and linking them to ElabJournal experiment:
``` ```
[iRODS] [iRODS]
...@@ -68,14 +57,15 @@ webdav = ...@@ -68,14 +57,15 @@ webdav =
title = title =
``` ```
- In the iRODS instance there are two iRODS resources available:
- bigstore: ~300GB
- demoResc: ~5GB
## Usage ## Usage
``` ```
./iUpload -c </path/to/config> -d </path/to/folder/or/file/to/upload> ./irods-iBridgesCli.py -h
./irods-iBridgesCli -c </path/to/config> -d </path/to/folder/or/file/to/upload>
./irods-iBridgesCli.py -c </path/to/config> -i </zone/home/path/to/coll/or/obj>
``` ```
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