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Master_Script_V1.1.R

@@ -30,15 +30,15 @@ setwd(wd)
 ##download files if not present
 file.list.wd.initial= list.files(wd)
 
-if(sum(grepl("example_data", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/example_data.csv", destfile="example_data.csv")
-if(sum(grepl("Documentation", file.list.wd.initial))==0) download.file("https://github.com/jvheerwaarden/PPS_data_management/blob/master/Documentation.docx?raw=true","Documentation.docx")
-if(sum(grepl("Readme", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/Readme","Readme.txt")
-if(sum(grepl("0_build_project", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/0_build_project.R", destfile="0_build_project.R")
-if(sum(grepl("1_data_cleaning", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/1_data_cleaning.R", destfile="1_data_cleaning.R")
-if(sum(grepl("2_analysis.R", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/2_analysis.R", destfile="2_analysis.R")
-if(sum(grepl("MiRAE_funcs", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/MiRAE_funcs.R", destfile="MiRAE_funcs.R")
-if(sum(grepl("RawDataConvertScript", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/RawDataConvertScript.R", destfile="RawDataConvertScript.R")
-if(sum(grepl("Meststof proef WUR.csv", file.list.wd.initial))==0) download.file("https://raw.githubusercontent.com/jvheerwaarden/PPS_data_management/master/Meststof%20proef%20WUR.csv", destfile="Meststof proef WUR.csv")
+if(sum(grepl("example_data", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/example_data.csv", destfile="example_data.csv")
+if(sum(grepl("Documentation", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/Documentation.docx?inline=false","Documentation.docx")
+if(sum(grepl("Readme", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/Readme","Readme.txt")
+if(sum(grepl("0_build_project", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/0_build_project.R", destfile="0_build_project.R")
+if(sum(grepl("1_data_cleaning", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/1_data_cleaning.R", destfile="1_data_cleaning.R")
+if(sum(grepl("2_analysis.R", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/2_analysis.R", destfile="2_analysis.R")
+if(sum(grepl("MiRAE_funcs", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/MiRAE_funcs.R", destfile="MiRAE_funcs.R")
+if(sum(grepl("RawDataConvertScript", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/RawDataConvertScript.R", destfile="RawDataConvertScript.R")
+if(sum(grepl("Meststof proef WUR.csv", file.list.wd.initial))==0) download.file("https://git.wur.nl/langu001/PPS_data_management/-/raw/master/Meststof%20proef%20WUR.csv", destfile="Meststof proef WUR.csv")
 #if(sum(grepl("Meststof proef WUR_metadata.xlsx", file.list.wd.initial))==0 download.file("https://github.com/ALanguillaume/MiRAE/blob/master/data/raw/Meststof%20proef%20WUR_metadata.xlsx?raw=true", destfile="Meststof proef WUR_metadata.xlsx")