more verbose output about assimilated values

da/baseclasses/optimizer.py

@@ -340,7 +340,7 @@ class Optimizer(object):
             savedict['dims']        = dimstate+dimobs
             savedict['values']      = data.tolist()
             savedict['comment']     = 'Kalman gain matrix of all obs and state vector elements'
-            dummy                   = f.AddData(savedict)
+            #dummy                   = f.AddData(savedict)
 
         dummy                       = f.close()
         msg = 'Diagnostics file closed ' ; logging.debug(msg)
@@ -359,7 +359,7 @@ class Optimizer(object):
             # Screen for flagged observations (for instance site not found, or no sample written from model)
 
             if self.flags[n] != 0:
-                msg = 'Skipping observation %d because of flag value %d'%(n,self.flags[n]) ; logging.debug(msg)
+                msg = 'Skipping observation (%s,%s) because of flag value %d'%(self.sitecode[n],self.obs_ids[n],self.flags[n]) ; logging.debug(msg)
                 continue
 
 
@@ -370,7 +370,7 @@ class Optimizer(object):
             if self.may_reject[n]:
                 threshold =  self.rejection_threshold*np.sqrt(self.R[n,n])
                 if np.abs(res) > threshold:
-                    msg = 'Rejecting observation %d because residual (%f) exceeds threshold (%f)'%(n,res,threshold) ; logging.debug(msg)
+                    msg = 'Rejecting observation (%s,%s) because residual (%f) exceeds threshold (%f)'%(self.sitecode[n],self.obs_ids[n],res,threshold) ; logging.debug(msg)
                     self.flags[n] = 2
                     continue
 
@@ -381,9 +381,9 @@ class Optimizer(object):
 
             if self.may_localize[n]:
                 dummy                   = self.Localize(n)
-                msg = 'Localized observation %d'%(n,) ; logging.debug(msg)
+                msg = 'Localized observation %s'%(self.obs_ids[n],) ; logging.debug(msg)
             else:
-                msg = 'Not allowed to Localize observation %d'%(n,) ; logging.debug(msg)
+                msg = 'Not allowed to Localize observation %s'%(self.obs_ids[n],) ; logging.debug(msg)
 
             alpha                       = np.double(1.0)/(np.double(1.0)+np.sqrt( (self.R[n,n])/self.HPHR[n,n] ) )