update of io function names for reading/writing of netcdf data and attributes

da/carbondioxide/obs.py

@@ -61,7 +61,7 @@ class CO2Observations(Observations):
             For now, we will stick with option (1) 
         
         """
-        ncf = io.CT_Read(self.obs_filename, 'read')
+        ncf = io.ct_read(self.obs_filename, 'read')
         idates = ncf.get_variable('date_components')
         dates = array([dtm.datetime(*d) for d in idates])
 
@@ -108,7 +108,7 @@ class CO2Observations(Observations):
             logging.error("...exiting")
             raise IOError, msg
 
-        ncf = io.CT_Read(filename, method='read')
+        ncf = io.ct_read(filename, method='read')
         ids = ncf.get_variable('obs_num')
         simulated = ncf.get_variable('flask')
         ncf.close()

da/carbondioxide/obspack.py

@@ -79,7 +79,7 @@ class ObsPackObservations(Observations):
         for ncfile in ncfilelist:
 
             infile = os.path.join(self.obspack_dir, 'data', 'nc', ncfile)
-            ncf = io.CT_Read(infile, 'read')
+            ncf = io.ct_read(infile, 'read')
             idates = ncf.get_variable('time_components')
             dates = array([dtm.datetime(*d) for d in idates])
 
@@ -91,12 +91,12 @@ class ObsPackObservations(Observations):
             evn = ncf.get_variable('obspack_id').take(subselect, axis=0)
             evn = [s.tostring().lower() for s in evn]
             evn = map(strip, evn)
-            site = ncf.GetAttribute('site_code')
+            site = ncf.get_attribute('site_code')
             lats = ncf.get_variable('latitude').take(subselect, axis=0)
             lons = ncf.get_variable('longitude').take(subselect, axis=0)
             alts = ncf.get_variable('altitude').take(subselect, axis=0)
             obs = ncf.get_variable('value').take(subselect, axis=0)
-            species = ncf.GetAttribute('dataset_parameter')
+            species = ncf.get_attribute('dataset_parameter')
             #strategy    = ncf.get_variable('sampling_strategy').take(subselect,axis=0)
             strategy = 1
             flags = ncf.get_variable('qc_flag').take(subselect, axis=0)
@@ -122,7 +122,7 @@ class ObsPackObservations(Observations):
             logging.error("...exiting")
             raise IOError, msg
 
-        ncf = io.CT_Read(filename, method='read')
+        ncf = io.ct_read(filename, method='read')
         ids = ncf.get_variable('obs_num')
         simulated = ncf.get_variable('flask')
         ncf.close()
@@ -467,4 +467,4 @@ class MixingRatioSample(object):
 
 
 if __name__ == "__main__":
-    pass
\ No newline at end of file
+    pass

da/carbondioxide/obspack_geocarbon.py

@@ -78,7 +78,7 @@ class ObsPackObservations(Observations):
         for ncfile in ncfilelist:
 
             infile = os.path.join(self.obspack_dir, 'data', 'nc', ncfile + '.nc')
-            ncf = io.CT_Read(infile, 'read')
+            ncf = io.ct_read(infile, 'read')
             idates = ncf.get_variable('time_components')
             dates = array([dtm.datetime(*d) for d in idates])
 
@@ -95,7 +95,7 @@ class ObsPackObservations(Observations):
             lons = ncf.get_variable('longitude').take(subselect, axis=0)
             alts = ncf.get_variable('altitude').take(subselect, axis=0)
             obs = ncf.get_variable('value').take(subselect, axis=0)
-            species = ncf.GetAttribute('dataset_parameter')
+            species = ncf.get_attribute('dataset_parameter')
             flags = ncf.get_variable('obs_flag').take(subselect, axis=0)
             ncf.close()
 
@@ -117,7 +117,7 @@ class ObsPackObservations(Observations):
             logging.error("...exiting")
             raise IOError, msg
 
-        ncf = io.CT_Read(filename, method='read')
+        ncf = io.ct_read(filename, method='read')
         ids = ncf.get_variable('obs_num')
         simulated = ncf.get_variable('flask')
         ncf.close()
@@ -162,7 +162,7 @@ class ObsPackObservations(Observations):
 
         for key, value in self.site_move.iteritems():
             msg = "Site is moved by %3.2f degrees latitude and %3.2f degrees longitude" % value 
-            f.AddAttribute(key, msg)
+            f.add_attribute(key, msg)
 
         data = self.getvalues('id')
 
@@ -372,7 +372,7 @@ class ObsPackObservations(Observations):
 
         for key, value in self.site_move.iteritems():
             msg = "Site is moved by %3.2f degrees latitude and %3.2f degrees longitude" % value 
-            f.AddAttribute(key, msg)
+            f.add_attribute(key, msg)
 
         data = self.getvalues('id')