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Commit e17081e7 authored by Tracanna, Vittorio's avatar Tracanna, Vittorio
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Update biosyntheticSPAdes_ranking_pipeline.py

parent de42691d
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......@@ -161,7 +161,7 @@ if __name__ == "__main__":
"""
calc_dist_cmd = "python {}/calculate_distance.py -o {}/candidates/ -i {}/candidates/ -db {}" \
.format(codeDir, argOptions["inputDir"], argOptions["inputDir"], argOptions["antismashdb"])
if not os.path.exists("REMOVE{}/candidates/networks_all/".format(argOptions["inputDir"])):
if not os.path.exists("{}/candidates/networks_all/".format(argOptions["inputDir"])):
calc_dist_cmd = "python {}/calculate_distance.py -o {}/candidates/ -i {}/candidates/ -db {}"\
.format(codeDir, argOptions["inputDir"], argOptions["inputDir"], argOptions["antismashdb"])
subprocess.check_call(calc_dist_cmd, shell=True)
......
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