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Created with Raphaël 2.2.017Feb1626Jan2524231723Dec26Sep5Jul414Jun25May17Mar1618Feb1724Nov221710854329Oct15Sep137Jun131May123-gff instead of --prodigal_file in example of command line optionsmastermasterChanged version to 1.1.2Removed a few lines of codes I used for testing, which caused fasta output to contain max 11 sequences.Parameter --prodigal_file is now --gff to be more clear. --prodigal_file still works, but it's hidden in the help page.Merge remote-tracking branch 'whokaryote/master'Updated version nr to 1.1.1Fixed a bug in the fasta splitter function, it can now handle contig ids with spaces. Also included a new fasta file as output, containing all the unclassified sequences.Merge pull request #6 from dirkjanvw/adjust_conda_install_commandupdate conda install phrasingMinor readability fixesMerge pull request #5 from dirkjanvw/make_readme_more_clearremove empty line from readmeupdate readmeAdded instructions for installation via condacommand line help page minor changeWarning for seqs > 32 mbpversion updateWarning for sequence > 32 MbpAdded outdir warnings, and implemented new fasta splitting function.Specified that seq_id should be a stringSpecified that contig header should be a stringAdded warning for contigs >32 mbp, and added script to split fasta according to classification.Merge remote-tracking branch 'whokaryote/master'Fixed version numberMerge pull request #4 from kbseah/masterGit ignore buildUpdate output file names in ReadmeAdd shebang line to main scriptSpecify numpy versionFixed READMEPut bash script in data dirminor fixFixed a typoRevert "changed location of get_euk_prok_fasta.sh to data"changed location of get_euk_prok_fasta.sh to dataRevert "changed location of get_euk_prok_fasta.sh to data"changed location of get_euk_prok_fasta.sh to datahelp page now shows usage correctlyAdded citation infoAdded links to training and test data files.
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