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Pronk, Lotte
Whokaryote
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Created with Raphaël 2.2.0
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-gff instead of --prodigal_file in example of command line options
master
master
Changed version to 1.1.2
Removed a few lines of codes I used for testing, which caused fasta output to contain max 11 sequences.
Parameter --prodigal_file is now --gff to be more clear. --prodigal_file still works, but it's hidden in the help page.
Merge remote-tracking branch 'whokaryote/master'
Updated version nr to 1.1.1
Fixed a bug in the fasta splitter function, it can now handle contig ids with spaces. Also included a new fasta file as output, containing all the unclassified sequences.
Merge pull request #6 from dirkjanvw/adjust_conda_install_command
update conda install phrasing
Minor readability fixes
Merge pull request #5 from dirkjanvw/make_readme_more_clear
remove empty line from readme
update readme
Added instructions for installation via conda
command line help page minor change
Warning for seqs > 32 mbp
version update
Warning for sequence > 32 Mbp
Added outdir warnings, and implemented new fasta splitting function.
Specified that seq_id should be a string
Specified that contig header should be a string
Added warning for contigs >32 mbp, and added script to split fasta according to classification.
Merge remote-tracking branch 'whokaryote/master'
Fixed version number
Merge pull request #4 from kbseah/master
Git ignore build
Update output file names in Readme
Add shebang line to main script
Specify numpy version
Fixed README
Put bash script in data dir
minor fix
Fixed a typo
Revert "changed location of get_euk_prok_fasta.sh to data"
changed location of get_euk_prok_fasta.sh to data
Revert "changed location of get_euk_prok_fasta.sh to data"
changed location of get_euk_prok_fasta.sh to data
help page now shows usage correctly
Added citation info
Added links to training and test data files.
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