Commits · afad78e4f6bd48cb07ab61ab4884a78d0df71df4 · Lannoy, Carlos de / baseLess · GitLab

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Jan 30, 2022
- bug fixes abundance analysis · afad78e4
  Lannoy, Carlos de authored 3 years ago
  
  afad78e4
Jan 27, 2022
- abundance validation: allow multiple samples per species · 5911a83d
  Lannoy, Carlos de authored 3 years ago
  
  5911a83d
Jan 26, 2022
- kmer size as option · e06ba693
  Carlos de Lannoy authored 3 years ago
  
  e06ba693
Jan 21, 2022
- hacky solution to memory issues with long squiggles, small stuff · 7267e0f8
  Lannoy, Carlos de authored 3 years ago
  
  7267e0f8
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · a9a2f738
  Carlos de Lannoy authored 3 years ago
  
  a9a2f738
- fixes · c7f8551e
  Carlos de Lannoy authored 3 years ago
  
  c7f8551e
- Complete wrapper to generate in silico squiggles · 4a3dcb4e
  Noordijk, Ben authored 3 years ago
  
  4a3dcb4e
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 2bd98cc8
  Noordijk, Ben authored 3 years ago
  
  2bd98cc8
- In silico mixtures can now be made · c9b50ef2
  Noordijk, Ben authored 3 years ago
  
  c9b50ef2
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 39b2a868
  Carlos de Lannoy authored 3 years ago
  
  39b2a868
- coa training works · bf13b447
  Carlos de Lannoy authored 3 years ago
  
  bf13b447
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 9eda77b2
  Noordijk, Ben authored 3 years ago
  
  # Conflicts: # coa_detection/AbfData.py
  9eda77b2
- Started script to make in silico mixtures · b33e799f
  Noordijk, Ben authored 3 years ago
  
  b33e799f
- Added support for unfiltered examples · 259a7cc8
  Noordijk, Ben authored 3 years ago
  
  259a7cc8
- allow randomly drawing 1 example · 214a9635
  Carlos de Lannoy authored 3 years ago
  
  214a9635
- Merge branch 'coa_analysis' of git.wur.nl:lanno001/baseless into coa_analysis · f8bb3c9e
  Carlos de Lannoy authored 3 years ago
  
  Conflicts: coa_detection/AbfData.py
  f8bb3c9e
- db building works · b29decf4
  Carlos de Lannoy authored 3 years ago
  
  b29decf4
- Added ability to extract unfiltered data · 2bf73b7d
  Noordijk, Ben authored 3 years ago
  
  2bf73b7d
- Test test · 21539ecb
  Noordijk, Ben authored 3 years ago
  
  21539ecb
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · b032b870
  Noordijk, Ben authored 3 years ago
  
  # Conflicts: # coa_detection/AbfData.py
  b032b870
- Added get_pos and get_neg methods · 77b82102
  Noordijk, Ben authored 3 years ago
  
  77b82102
- ABF parsing, plotting, and filtering · b9d3f152
  Noordijk, Ben authored 3 years ago
  
  b9d3f152
- cOA detection general code structure · aa447c3e
  Carlos de Lannoy authored 3 years ago
  
  aa447c3e
Jan 20, 2022
- start abf reading functionality · 201ec87f
  Lannoy, Carlos de authored 3 years ago
  
  201ec87f
Jan 18, 2022
- update abundance estimation benchmark · b2ff940a
  Carlos de Lannoy authored 3 years ago
  
  b2ff940a
Jan 16, 2022
- abundance result analysis · c358f375
  Lannoy, Carlos de authored 3 years ago
  
  c358f375
Jan 12, 2022
- multiple samping abundance estimation benchmark · 81a92966
  Carlos de Lannoy authored 3 years ago
  
  81a92966
- multiple samping abundance estimation benchmark · fd6276e3
  Carlos de Lannoy authored 3 years ago
  
  fd6276e3
Jan 07, 2022
- model accuracy filtering · 36125033
  Lannoy, Carlos de authored 3 years ago
  
  36125033
Dec 28, 2021
- small fixes abundance estimation · 22b33bab
  Lannoy, Carlos de authored 3 years ago
  
  22b33bab
Dec 27, 2021
- add abundance estimation mode · 3f6cd45b
  Lannoy, Carlos de authored 3 years ago
  
  3f6cd45b
Dec 21, 2021
- batch processing · a1aa952f
  Lannoy, Carlos de authored 3 years ago
  
  a1aa952f
Dec 17, 2021
- in 16s validation make training on the fly optional · 6482b41b
  Carlos de Lannoy authored 3 years ago
  
  6482b41b
- ReadTable with queues instead of sqlite · d464a531
  Carlos de Lannoy authored 3 years ago
  
  d464a531
- bug fixes compile_model · 3dc43ac8
  Carlos de Lannoy authored 3 years ago
  
  3dc43ac8
Dec 14, 2021
- fix bug in 16S validtion w premade indices · fb465d95
  Carlos de Lannoy authored 3 years ago
  
  fb465d95
Dec 11, 2021
- allow using pre-made index files in validate_16S · e49000d7
  Lannoy, Carlos de authored 3 years ago
  
  e49000d7
Dec 10, 2021
- update validation routine · d92b49d1
  Carlos de Lannoy authored 3 years ago
  
  d92b49d1
Dec 09, 2021
- switch off complicated k-mer selection process for 16S k-mers · 383bdcc0
  Lannoy, Carlos de authored 3 years ago
  
  383bdcc0
- compile all elements of overarching model in single graph · 0faeea48
  Lannoy, Carlos de authored 3 years ago
  
  0faeea48