Fixed duplicate species in ground_truth

tools/set_ground_truths_of_reads.py

@@ -52,9 +52,9 @@ def main():
                                                            'read id',
                                                            'species',
                                                            'species id'])
-    # Dirty fix because NZ_DS264585.1 and NZ_DS264586.1 belong to same species.
-    # Name is different due to scaffold so we have to change the species id
+    # Dirty fix because some species ID belong to same species
     df.loc[df['species id'] == 'NZ_DS264585.1', 'species id'] = 'NZ_DS264586.1'
+    df.loc[df['species id'] == 'CP000143.2', 'species id'] = 'CP000144.2'
     df.to_csv(args.out_path, index=False)