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Commit b8d346ff authored by Noordijk, Ben's avatar Noordijk, Ben
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Hyperparameters as found by hyperopt

parent 4310b82f
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1 merge request!3Added data preparation, hyperparameter optimisation, benchmarking code and k-mer library visualisation
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# CNN ARCHITECTURE
nn_class: Cnn_test
batch_size: 32
eps_per_kmer_switch: 20
batch_norm: 0
batch_size: 24
dropout_keep_prob: 0.9
eps_per_kmer_switch: 25
filter_width: 1000
kernel_size: 10
filters: 6
filters: 5
kernel_size: 19
learning_rate: 0.002
num_batches: 320
num_kmer_switches: 1
learning_rate: 0.005
num_layers: 2
pool_size: 8 # Pool size to use for 1d maxpool
threshold: 0.5
pool_size: 10 # Pool size to use for 1d maxpool
num_batches: 320
dropout_keep_prob: 0.7
num_layers: 4
batch_norm: 1
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