Database building now randomises and stores example reads by default

run_production_pipeline.sf

@@ -53,11 +53,8 @@ rule generate_training_db:
             --target {wildcards.target} \
             --width {filter_width} \
             --hdf-path {hdf_path} \
-            {% if uncenter_kmer %}
-                --uncenter-kmer \
-            {% endif %}
-            &> {logs_dir}db_train_{wildcards.target}.log
-            
+            --store-example-reads \
+            --randomize &> {logs_dir}db_train_{wildcards.target}.log
         """
 
 rule generate_test_db:
@@ -76,9 +73,6 @@ rule generate_test_db:
             --target {wildcards.target} \
             --width {filter_width} \
             --hdf-path {hdf_path} \
-            {% if uncenter_kmer %}
-                --uncenter-kmer \
-            {% endif %}
-            &> {logs_dir}db_test_{wildcards.target}.log
-
+            --store-example-reads \
+            --randomize &> {logs_dir}db_test_{wildcards.target}.log
         """