Commit aa282e1c authored 3 years ago by Lannoy, Carlos de

Merge branch 'master' into 'ben_dev'

# Conflicts:
#   CnnParameterFile.yaml

parents 244ca3ba 3bc98026

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1 merge request!3Added data preparation, hyperparameter optimisation, benchmarking code and k-mer library visualisation

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CnnParameterFile.yaml 3 additions, 1 deletion

CnnParameterFile.yaml
data/Porecamps_MacBook_Pro_local_20171009_FAH20409_MN17024_mux_scan_Bham_Run1_20171009_DirectRNA_74614_read_102_ch_18_strand.fast 0 additions, 0 deletions

..._Run1_20171009_DirectRNA_74614_read_102_ch_18_strand.fast
data/all_reads.fastq 0 additions, 120 deletions

data/all_reads.fastq
data/chiron_called/meta/all.meta 0 additions, 2 deletions

data/chiron_called/meta/all.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch100_read42_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch100_read42_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch100_read8_strand.meta 0 additions, 6 deletions

...can_170301_MG1655_PC_RAD002_76964_ch100_read8_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch101_read56_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch101_read56_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch103_read6_strand.meta 0 additions, 6 deletions

...can_170301_MG1655_PC_RAD002_76964_ch103_read6_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch104_read175_strand.meta 0 additions, 6 deletions

...n_170301_MG1655_PC_RAD002_76964_ch104_read175_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch104_read3_strand.meta 0 additions, 6 deletions

...can_170301_MG1655_PC_RAD002_76964_ch104_read3_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch108_read94_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch108_read94_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch109_read6_strand.meta 0 additions, 6 deletions

...can_170301_MG1655_PC_RAD002_76964_ch109_read6_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch109_read81_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch109_read81_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch10_read113_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch10_read113_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch112_read63_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch112_read63_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch116_read18_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch116_read18_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch119_read4_strand.meta 0 additions, 6 deletions

...can_170301_MG1655_PC_RAD002_76964_ch119_read4_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch126_read12_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch126_read12_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch126_read36_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch126_read36_strand.meta
data/chiron_called/meta/nanopore2_20170301_FNFAF09967_MN17024_mux_scan_170301_MG1655_PC_RAD002_76964_ch12_read113_strand.meta 0 additions, 6 deletions

...an_170301_MG1655_PC_RAD002_76964_ch12_read113_strand.meta

with 3 additions and 219 deletions

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