Merge branch 'master' of git.wur.nl:lanno001/baseless
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- 16S_db/dummy 0 additions, 0 deletions16S_db/dummy
- argparse_dicts.py 71 additions, 7 deletionsargparse_dicts.py
- data/ncbi_16S_bacteria_archaea_kmer_counts.parquet 0 additions, 0 deletionsdata/ncbi_16S_bacteria_archaea_kmer_counts.parquet
- env.yaml 1 addition, 0 deletionsenv.yaml
- inference/InferenceModel.py 1 addition, 1 deletioninference/InferenceModel.py
- inference/compile_model.py 105 additions, 41 deletionsinference/compile_model.py
- run_production_pipeline.py 8 additions, 1 deletionrun_production_pipeline.py
- run_production_pipeline.sf 6 additions, 3 deletionsrun_production_pipeline.sf
- threshold_search/InferenceModel.py 60 additions, 0 deletionsthreshold_search/InferenceModel.py
- threshold_search/optimize_thresholds.py 85 additions, 0 deletionsthreshold_search/optimize_thresholds.py
- threshold_search/optimize_thresholds.sf 77 additions, 0 deletionsthreshold_search/optimize_thresholds.sf
- threshold_search/optimize_thresholds_analysis.sf 112 additions, 0 deletionsthreshold_search/optimize_thresholds_analysis.sf
- threshold_search/run_logit_inference.py 51 additions, 0 deletionsthreshold_search/run_logit_inference.py
- tools/graph_classified_squiggles.py 1 addition, 0 deletionstools/graph_classified_squiggles.py
- tools/plot_nn_performance.py 1 addition, 1 deletiontools/plot_nn_performance.py
- validation/quick_benchmark.py 59 additions, 27 deletionsvalidation/quick_benchmark.py
- validation/quick_benchmark_16s.sf 90 additions, 0 deletionsvalidation/quick_benchmark_16s.sf
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