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Commit 59cad535 authored by Noordijk, Ben's avatar Noordijk, Ben
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Added optional target_dbs rule to run_production_pipeline.sf in case you only...

Added optional target_dbs rule to run_production_pipeline.sf in case you only want to build databases
parent 323540ad
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1 merge request!3Added data preparation, hyperparameter optimisation, benchmarking code and k-mer library visualisation
......@@ -13,6 +13,13 @@ rule target:
input:
nns=expand('{{ nn_dir }}{target}/nn.h5', target={{ kmer_list }})
# Use this target rule if you only want to build the dbs and not train the networks
rule target_dbs:
input:
expand('{{ db_dir }}train/{target}/db.fs', target={{ kmer_list }}),
expand('{{ db_dir }}test/{target}/db.fs', target={{ kmer_list }})
rule generate_nns:
input:
target_db_train='{{ db_dir }}train/{target}/db.fs',
......
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