Now use 95% alignment cutoff for guppy

compare_benchmark_performance/compare_accuracy.py

@@ -68,7 +68,7 @@ def parse_sequencing_summary(file_path, ground_truth):
                                     1 if x.find(target_id) == 0
                                     else 0)
 
-    y_pred = df['alignment_genome'].apply(lambda x: 0 if x == '*' else 1)
+    y_pred = df['alignment_identity'].apply(lambda x: 0 if x < 0.95 else 1)
     f1 = f1_score(y_true, y_pred)
     accuracy = accuracy_score(y_true, y_pred)
     cm = confusion_matrix(y_true, y_pred)